Evidence map›Paper›PMID 35861512›Full record

ArticleMicrobiology spectrum2022

Time Series Genomics of Pseudomonas aeruginosa Reveals the Emergence of a Hypermutator Phenotype and Within-Host Evolution in Clinical Inpatients.

Hongjie Liu, Lang Yang, Qichao Chen, Hongbin Song, Xiaochen Bo, Jingyu Guo, Peng Li, Ming Ni

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  4. Phenotypes of amSystems · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hongjie Liu *Institute of Health Service and Transfusion Medicine, Beijing, China.
Lang Yang *Chinese PLA Center for Disease Control and Prevention, Beijing, China.
Qichao ChenChinese PLA Center for Disease Control and Prevention, Beijing, China.
Hongbin SongChinese PLA Center for Disease Control and Prevention, Beijing, China.
Xiaochen BoInstitute of Health Service and Transfusion Medicine, Beijing, China.
Jingyu GuoChinese PLA Center for Disease Control and Prevention, Beijing, China.
Peng LiChinese PLA Center for Disease Control and Prevention, Beijing, China.ORCID 0000-0002-3145-887X
Ming NiInstitute of Health Service and Transfusion Medicine, Beijing, China.ORCID 0000-0001-9465-2787

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas aeruginosa, a common opportunistic pathogen, is one of the leading etiological agents of nosocomial infections. Many previous studies have reported the nosocomial transmission and epidemiology of P. aeruginosa infections. However, longitudinal studies regarding the dynamics of P. aeruginosa colonization and infection in health care settings are limited. We obtained longitudinal samples from aged patients with prolonged intensive care unit (ICU) stays (~4 to 19 months). P. aeruginosa was isolated from 71 samples obtained from seven patients and characterized by whole-genome sequencing. The P. aeruginosa isolates were assigned to 10 clonal complexes, and turnover of main clones was observed in sequential sputum samples from two patients. By comparing intraclonal genomic diversities, we identified two clones that had significantly higher numbers of single nucleotide polymorphisms and variations in homopolymeric sequences than the other clones, indicating a hypermutator phenotype. These hypermutator clones were associated with mutations T147I/G521S and P27L in the MutL protein, and their mutation rates were estimated to be 3.20 × 10

Indexed as

Cross InfectionPseudomonas aeruginosaPseudomonas InfectionsAgedAnti-Bacterial AgentsDrug Resistance, Multiple, BacterialEvolution, MolecularGenomicsHumansInpatientsPhenotypeTime FactorsAnti-Bacterial Agentshypermutatorlongitudinal studynosocomial infectionsPseudomonas aeruginosawhole-genome sequencing

Identifiers

PMID35861512
PMCPMC9430856
OpenAlexW4286493333

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.