ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2022
Chromosome-level genome of Tibetan naked carp (Gymnocypris przewalskii) provides insights into Tibetan highland adaptation.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 35 citations in OpenAlex.
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- Haplotype-resolved chromosome-level genome assembly of Schizothorax davidi.Scientific data · 2026Article
- Schizothoracinae in Plateau River Networks: Drainage History, Polyploid Genome Evolution, Multi-Omics Evidence Chains, and Conservation Units.Animals : an open access journal from MDPI · 2026Review
- Chromosome-level genome assembly and annotation of the schizothoracine fish Gymnodiptychus pachycheilus.Scientific data · 2026Article
- Protective role of nano-selenium on Gymnocypris przewalskii under saline-alkaline stress: a comprehensive analysis of transcriptomics and metabolomics.Fish physiology and biochemistry · 2026Article
- Genetic Variation ofAnimals : an open access journal from MDPI · 2026Article
- Chromosome-level genome assembly and population genomic analysis provide insights into the genetic diversity and adaption of Schizopygopsis younghusbandi on the Tibetan Plateau.Integrative zoology · 2025Article
- Chromosome-level genome assembly of rock carp (Procypris rabaudi).Scientific data · 2025Article
- Factors Beyond Karstification Have Shaped the Population Structure of a Surface-Dwelling Minnow (Evolutionary applications · 2025Article
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- Transcriptomics and proteomics provide insights into the adaptative strategies of Tibetan naked carps (Gymnocypris przewalskii) to saline-alkaline variations.BMC genomics · 2025Article
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- A chromosome-level genome assembly of big-barbel schizothorcin, Schizothorax macropogon.Scientific data · 2024Article
- Recent and Recurrent Autopolyploidization Fueled Diversification of Snow Carp on the Tibetan Plateau.Molecular biology and evolution · 2024Article
- Epigenetic diversity of genes with copy number variations among natural populations of the three-spined stickleback.Evolutionary applications · 2024Article
- Whole-Genome Sequencing Analyses Reveal the Evolution Mechanisms of Typical Biological Features ofAnimals : an open access journal from MDPI · 2024Article
- Population structure and adaptability analysis of Schizothorax o'connori based on whole-genome resequencing.BMC genomics · 2024Article
- Anemonefishes: A model system for evolutionary genomics.F1000Research · 2023Review
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
Abstract
Gymnocypris przewalskii, a cyprinid fish endemic to the Qinghai-Tibetan Plateau, has evolved unique morphological, physiological and genetic characteristics to adapt to the highland environment. Herein, we assembled a high-quality G. przewalskii tetraploid genome with a size of 2.03 Gb and scaffold N50 of 44.93 Mb, which was anchored onto 46 chromosomes. The comparative analysis suggested that gene families related to highland adaptation were significantly expanded in G. przewalskii. According to the G. przewalskii genome, we evaluated the phylogenetic relationship of 13 schizothoracine fishes, and inferred that the demographic history of G. przewalskii was strongly associated with geographic and eco-environmental alterations. We noticed that G. przewalskii experienced whole-genome duplication, and genes preserved post duplication were functionally associated with adaptation to high salinity and alkalinity. In conclusion, a chromosome-scale G. przewalskii genome provides an important genomic resource for teleost fish, and will particularly promote our understanding of the molecular evolution and speciation of fish in the highland environment.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.