Evidence map›Paper›PMID 35861177›Full record

ArticleLab on a chip2022

Rapid nucleic acid extraction from skin biopsies using a point-of-care device.

Duncan McCloskey, David Erickson

Open access · greenAbstract read
In one paragraph

Article in Lab on a chip, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Duncan McCloskeyMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA.ORCID 0000-0001-7738-0142
David EricksonSibley School of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY, USA. de54@cornell.edu.ORCID 0000-0002-1624-9711
Cornell University · US

Funding

Early Stage Diagnosis of Kaposi's Sarcoma in Limited Resource Settings using KS-DetectUH3CA202723 · NCI · CORNELL UNIVERSITY · PI ERICKSON, DAVID CARL, MARTIN, JEFFREY N · 2018 to 2021
$3.2M
Rapid Sample-to-Answer Diagnosis of Kaposi's Sarcoma Across Sub-Saharan Africa using KS-COMPLETEU01CA269199 · NCI · CORNELL UNIVERSITY · PI Ethel Cesarman, David Carl Erickson · 2022 to 2026
$3.0M
NCI NIH HHS U01 CA269199NCI NIH HHS UH3 CA202723
6 · The paper itself

Abstract

Sample processing is often the rate-limiting step for point-of-care nucleic acid testing, especially for large, robust tissues such as skin biopsies, which can be used to diagnose a variety of dermatological diseases. Extraction of nucleic acids from these samples often relies on lengthy enzymatic digestions, increasing the time to result and reducing the potential impact of rapid molecular diagnostic approaches. To address this, we have developed BLENDER, a device for rapid nucleic acid extraction from tissue biopsies that combines bead-beating homogenization with simultaneous sample heating for enzymatic lysis. Our device can produce a complete DNA yield from a 3 mm cylindrical skin biopsy with only a 15 minute extraction compared to 4 hours when using a commercially available extraction protocol. Decreasing sample-processing time for tissue biopsies could reduce time-to-result for downstream analysis, enabling faster point-of-care diagnosis of solid cancers in limited resource settings.

Indexed as

Nucleic AcidsBiopsyDNANucleic Acid Amplification TechniquesPoint-of-Care SystemsDNANucleic Acids

Identifiers

PMID35861177
PMCPMC9399003
OpenAlexW4285241572

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.