Evidence map›Paper›PMID 35860694›Full record

ArticleEvolutionary bioinformatics online2022

Mononucleotide A-repeats may Play a Regulatory Role in Endothermic Housekeeping Genes.

Jatuphol Pholtaisong, Nachol Chaiyaratana, Chatchawit Aporntewan, Apiwat Mutirangura

Abstract read
In one paragraph

Article in Evolutionary bioinformatics online, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jatuphol PholtaisongProgram in Bioinformatics and Computational Biology, Graduate School, Chulalongkorn University, Pathumwan, Bangkok, Thailand.ORCID https://orcid.org/0000-0002-2575-8366
Nachol ChaiyaratanaDepartment of Electrical and Computer Engineering, Faculty of Engineering, King Mongkut's University of Technology North Bangkok, Bangkok, Thailand.ORCID https://orcid.org/0000-0001-5194-8801
Chatchawit AporntewanProgram in Bioinformatics and Computational Biology, Graduate School, Chulalongkorn University, Pathumwan, Bangkok, Thailand.ORCID https://orcid.org/0000-0001-7290-8286
Apiwat MutiranguraCenter of Excellence in Molecular Genetics of Cancer and Human Diseases, Department of Anatomy, Faculty of Medicine, Chulalongkorn University, Pathumwan, Bangkok, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Coding and non-coding short tandem repeats (STRs) facilitate a great diversity of phenotypic traits. The imbalance of mononucleotide A-repeats around transcription start sites (TSSs) was found in 3 mammals: Principal Findings: We found that the imbalance pattern originated in some vertebrates. A similar pattern was observed in mammals and birds, but not in amphibians and reptiles. We proposed that the enriched A-repeats upstream of TSSs is a novel hallmark of endotherms or warm-blooded animals. Gene ontology analysis indicates that the primary function of upstream A-repeats involves metabolism, cellular transportation, and sensory perception (smell and chemical stimulus) through housekeeping genes. Conclusions: Upstream A-repeats may play a regulatory role in the metabolic process of endothermic animals.

Indexed as

A-repeatsendothermshousekeeping genesmammalsmicrosatellitesmononucleotide repeatsShort tandem repeatsvertebrates

Identifiers

PMID35860694
PMCPMC9290108

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.