Evidence map›Paper›PMID 35859771›Full record

ArticleFrontiers in public health2022

A Comparison Between Single- and Multi-Scale Approaches for Classification of Histopathology Images.

Marina D'Amato, Przemysław Szostak, Benjamin Torben-Nielsen

Abstract readComparative Study
In one paragraph

Article in Frontiers in public health, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Zoom Pattern Signatures for Fetal Ultrasound Structures.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Improving Representation Learning for Histopathologic Images with Cluster Constraints.Proceedings. IEEE International Conference on Computer Vision · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marina D'AmatoRoche Information Solutions, F. Hoffmann-La Roche AG, Basel, Switzerland.
Przemysław SzostakPersonalized Healthcare, Billennium by Order of Roche Polska Sp. z o.o., Warsaw, Poland.
Benjamin Torben-NielsenRoche Information Solutions, F. Hoffmann-La Roche AG, Basel, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole slide images (WSIs) are digitized histopathology images. WSIs are stored in a pyramidal data structure that contains the same images at multiple magnification levels. In digital pathology, most algorithmic approaches to analyze WSIs use a single magnification level. However, images at different magnification levels may reveal relevant and distinct properties in the image, such as global context or detailed spatial arrangement. Given their high resolution, WSIs cannot be processed as a whole and are broken down into smaller pieces called tiles. Then, a prediction at the tile-level is made for each tile in the larger image. As many classification problems require a prediction at a slide-level, there exist common strategies to integrate the tile-level insights into a slide-level prediction. We explore two approaches to tackle this problem, namely a multiple instance learning framework and a representation learning algorithm (the so-called "barcode approach") based on clustering. In this work, we apply both approaches in a single- and multi-scale setting and compare the results in a multi-label histopathology classification task to show the promises and pitfalls of multi-scale analysis. Our work shows a consistent improvement in performance of the multi-scale models over single-scale ones. Using multiple instance learning and the barcode approach we achieved a 0.06 and 0.06 improvement in F1 score, respectively, highlighting the importance of combining multiple scales to integrate contextual and detailed information.

Indexed as

Image Interpretation, Computer-AssistedAlgorithmsCluster AnalysisDeep Learningdeep learningdigital pathologymulti-label classificationmultiple instance learningmulti-scale analysisrepresentation learning

Identifiers

PMID35859771
PMCPMC9289164

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.