Evidence map›Paper›PMID 35859169›Full record

ArticleNature2022

Mechanisms of APOBEC3 mutagenesis in human cancer cells.

Mia Petljak, Alexandra Dananberg, Kevan Chu, Erik N Bergstrom, Josefine Striepen, Patrick von Morgen, Yanyang Chen, Hina Shah, Julian E Sale, Ludmil B Alexandrov and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
21.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 243 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Distinct repair processes produce APOBEC-induced deletions, tandem substitutions, and complex mutations in yeast and human cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Evolution ofInternational journal of molecular sciences · 2026
    Review
  11. Collapsing retroviruses for efficient delivery of viro-toxic cargoes.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Squamous-state excursions activate APOBEC3A in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  16. Article
  17. A sibling study of variation in parental mutation rates.bioRxiv : the preprint server for biology · 2026
    Article
  18. Review
  19. Article
  20. Article

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Mia PetljakBroad Institute of MIT and Harvard, Cambridge, MA, USA. mpetljak@broadinstitute.org.ORCID http://orcid.org/0000-0001-8361-5390
Alexandra Dananberg *Molecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kevan Chu *Molecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Erik N BergstromDepartment of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA, USA.
Josefine StriepenMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Patrick von MorgenMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0002-0614-6292
Yanyang ChenMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-4665-9671
Hina ShahMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Julian E SaleDivision of Protein & Nucleic Acid Chemistry, Medical Research Council Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-5031-3780
Ludmil B AlexandrovDepartment of Cellular and Molecular Medicine, UC San Diego, La Jolla, CA, USA.
Michael R StrattonCancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Hinxton, UK. mrs@sanger.ac.uk.ORCID http://orcid.org/0000-0001-6035-153X
John MaciejowskiMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA. maciejoj@mskcc.org.ORCID http://orcid.org/0000-0001-8134-9308
Memorial Sloan Kettering Cancer Center · USUniversity of California San Diego · USBroad Institute · USMRC Laboratory of Molecular Biology · GBWellcome Sanger Institute · GB

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Detecting Mutational Signatures of Environmental Mutagens in Heathy Individuals for Personalized Cancer PreventionR01ES032547 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ALEXANDROV, LUDMIL B · 2021 to 2025
$3.4M
Mutational Signatures of a Combined Environmental Exposure: Arsenic and Ultraviolet RadiationR01ES030993 · NIEHS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI HUDSON, LAURIE G, LIU, KE JIAN · 2020 to 2024
$2.5M
Immune control and genomic instability at micronucleiR37CA261183 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JOHN MACIEJOWSKI · 2022 to 2026
$2.4M
The origins of chromosome rearrangement in the cancer genomeR00CA212290 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI MACIEJOWSKI, JOHN · 2018 to 2020
$654k
Medical Research Council MC_U105178808Medical Research Council U105178808NCI NIH HHS P30 CA008748NCI NIH HHS R00 CA212290NCI NIH HHS R37 CA261183NIEHS NIH HHS R01 ES030993NIEHS NIH HHS R01 ES032547Wellcome Trust
6 · The paper itself

Abstract

The APOBEC3 family of cytosine deaminases has been implicated in some of the most prevalent mutational signatures in cancer

Indexed as

APOBEC DeaminasesMutagenesisNeoplasmsCell Line, TumorCytidine DeaminaseDNA-Directed DNA PolymeraseGene DeletionGenome, HumanHumansMinor Histocompatibility AntigensProteinsUracil-DNA GlycosidaseY-Family DNA PolymerasesAPOBEC3A protein, humanAPOBEC3B protein, humanAPOBEC3 proteins, humanAPOBEC DeaminasesCytidine DeaminaseDNA-Directed DNA PolymeraseMinor Histocompatibility AntigensProteinsREV1 protein, humanUracil-DNA GlycosidaseY-Family DNA Polymerases

Identifiers

PMID35859169
PMCPMC9329121
OpenAlexW4286007893

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.