Evidence map›Paper›PMID 35859148›Full record

ArticleNature communications2022

Kinesin-8-specific loop-2 controls the dual activities of the motor domain according to tubulin protofilament shape.

Byron Hunter, Matthieu P M H Benoit, Ana B Asenjo, Caitlin Doubleday, Daria Trofimova, Corey Frazer, Irsa Shoukat, Hernando Sosa, John S Allingham

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural switching of tubulin in the microtubule lattice.Biochemical Society transactions · 2025
    Review
  4. Mechanism and regulation of kinesin motors.Nature reviews. Molecular cell biology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Byron Hunter *Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L 3N6, Canada.
Matthieu P M H Benoit *Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.ORCID 0000-0002-2880-7717
Ana B AsenjoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.ORCID 0000-0003-3752-9453
Caitlin DoubledayDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L 3N6, Canada.
Daria TrofimovaDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L 3N6, Canada.
Corey FrazerDepartment of Molecular Microbiology and Immunology, Brown University, Providence, RI, 02912, USA.ORCID 0000-0002-7660-6610
Irsa ShoukatDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L 3N6, Canada.
Hernando SosaDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, 10461, USA. hernando.sosa@einsteinmed.edu.ORCID 0000-0002-0483-5369
John S AllinghamDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, K7L 3N6, Canada. allinghj@queensu.ca.ORCID 0000-0002-0918-3152
Queen's University · CAAlbert Einstein College of Medicine · USBrown University · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
MECHANISM OF MICROTUBULE DYNAMICS REGULATION BY KINESINSR01GM113164 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI HERNANDO Jose SOSA · 2015 to 2026
$5.6M
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM113164NIH HHS S10 OD019994
6 · The paper itself

Abstract

Kinesin-8s are dual-activity motor proteins that can move processively on microtubules and depolymerize microtubule plus-ends, but their mechanism of combining these distinct activities remains unclear. We addressed this by obtaining cryo-EM structures (2.6-3.9 Å) of Candida albicans Kip3 in different catalytic states on the microtubule lattice and on a curved microtubule end mimic. We also determined a crystal structure of microtubule-unbound CaKip3-ADP (2.0 Å) and analyzed the biochemical activity of CaKip3 and kinesin-1 mutants. These data reveal that the microtubule depolymerization activity of kinesin-8 originates from conformational changes of its motor core that are amplified by dynamic contacts between its extended loop-2 and tubulin. On curved microtubule ends, loop-1 inserts into preceding motor domains, forming head-to-tail arrays of kinesin-8s that complement loop-2 contacts with curved tubulin and assist depolymerization. On straight tubulin protofilaments in the microtubule lattice, loop-2-tubulin contacts inhibit conformational changes in the motor core, but in the ADP-Pi state these contacts are relaxed, allowing neck-linker docking for motility. We propose that these tubulin shape-induced alternations between pro-microtubule-depolymerization and pro-motility kinesin states, regulated by loop-2, are the key to the dual activity of kinesin-8 motors.

Indexed as

KinesinsTubulinAdenosine DiphosphateMicrotubulesAdenosine DiphosphateKinesinsTubulin

Identifiers

PMID35859148
PMCPMC9300613
OpenAlexW4286005722

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.