Evidence map›Paper›PMID 35859139›Full record

ArticleArchives of microbiology2022

Anaerococcus ihuae sp. nov. and Mediannikoviicoccus vaginalis gen. nov., sp. nov., two new bacteria isolated from human vaginal samples.

Claudia Ly, Linda Abou Chacra, Eva Birsal, Gabriel Haddad, Cheikh Ibrahima Lo, Nicholas Amstrong, Stéphane Alibar, Blandine Courbière, Florence Bretelle, Florence Fenollar

Abstract read
In one paragraph

Article in Archives of microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Further dissection ofInternational journal of systematic and evolutionary microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Claudia Ly *Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Linda Abou Chacra *Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Eva BirsalAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Gabriel HaddadInstitut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France.
Cheikh Ibrahima LoAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Nicholas AmstrongInstitut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France.
Stéphane AlibarInstitut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France.
Blandine CourbièreDepartment of Gynecology and Obstetrics, Gynépole, La Conception, AP-HM, Marseille, France.
Florence BretelleAix-Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Florence FenollarAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France. florence.fenollar@univ-amu.fr.ORCID http://orcid.org/0000-0002-7517-0173

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strains Marseille-Q5893 (= CSUR Q5893 = CECT 30496) and Marseille-Q5883 (= CSUR Q5883 = CECT 30497) were isolated from vaginal samples using the culturomics approach. The 16S rRNA gene sequences of each strain were sequenced and then compared by BLASTn to the NCBI database. Strains Marseille-Q5893 and Marseille-Q5883 were most closely related to Anaerococcus obesiensis and Finegoldia magna, with identities of 98.5% and 90.0%, respectively. Strain Marseille-Q5893 is strictly anaerobic, while strain Marseille-Q5883 is facultative anaerobic. Both strains are Gram-positive, coccus-shaped, oxidase- and catalase-negative. The most abundant fatty acid for both strains is hexadecanoic acid, followed by 9-octadecenoic acid and tetradecanoic acid. Strain Marseille-Q5893 has a genome size of 1,831,271 bp with a G+C content of 29.4 mol%, whereas strain Marseille-Q5883 has a genome of 1,997,945 bp with a 33.6 mol% G+C content. The genomic comparison of closely related species with strains Marseille-Q5893 and Marseille-Q5883 showed that all digital DNA-DNA hybridization (dDDH) and orthologous average nucleotide identity (OrthoANI) values were lower than the published species thresholds (70% and 95-96%, respectively). Based on these data, we conclude that strain Marseille-Q5893 belongs to a new species in the family Peptoniphilaceae and strain Marseille-Q5883 belongs to a new genus in the family Peptostreptococcaceae. For these two new bacterial species, the names Anaerococcus ihuae sp. nov. and Mediannikoviicoccus vaginalis gen. nov., sp. nov., were proposed.

Indexed as

EubacterialesFatty AcidsBase CompositionDNA, BacterialFemaleHumansPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialFatty AcidsRNA, Ribosomal, 16SAnaerobicAnaerococcus ihuae sp. nov.Mediannikoviicoccus vaginalis gen. nov., sp. novTaxonomyVaginal microbiota

Identifiers

PMID35859139
PMCPMC9300522

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.