Evidence map›Paper›PMID 35858434›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Proximity interactome analysis of Lassa polymerase reveals eRF3a/GSPT1 as a druggable target for host-directed antivirals.

Jingru Fang, Colette Pietzsch, Haydar Witwit, George Tsaprailis, Gogce Crynen, Kelvin Frank Cho, Alice Y Ting, Alexander Bukreyev, Erica Ollmann Saphire, Juan Carlos de la Torre

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  7. Discovery of Potent Degraders of the Dengue Virus Envelope Protein.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  8. Discovery of Potent Degraders of the Dengue Virus Envelope Protein.bioRxiv : the preprint server for biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Jingru FangDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA 92037.ORCID 0000-0002-2482-2338
Colette PietzschDepartment of Pathology, University of Texas Medical Branch, Galveston, TX 77550.ORCID 0000-0002-0759-3983
Haydar WitwitDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA 92037.
George TsaprailisProteomics Core, Scripps Research, Jupiter, FL 33458.
Gogce CrynenBioinformatics and Statistics Core, Scripps Research, Jupiter, FL 33458.ORCID 0000-0001-6066-9900
Kelvin Frank ChoCancer Biology Program, Stanford University, Stanford, CA 94305.
Alice Y TingDepartment of Genetics, Stanford University, Stanford, CA 94305.
Alexander BukreyevDepartment of Pathology, University of Texas Medical Branch, Galveston, TX 77550.ORCID 0000-0002-0342-4824
Erica Ollmann SaphireLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-1206-7451
Juan Carlos de la TorreDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA 92037.ORCID 0000-0002-8171-8115
La Jolla Institute for Immunology · USScripps Institution of Oceanography · USThe University of Texas Medical Branch at Galveston · USChan Zuckerberg Initiative (United States) · USScripps Research Institute · USStanford University · US

Funding

A Virus-Free Cell Platform To Discover Inhibitors Of Lassa Fever VirusR01AI125626 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 2017 to 2019
$1.3M
Super-resolution confocal microscopeS10OD021831 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI LEY, KLAUS F. · 2017 to 2017
$566k
Modulation of Lassa Virus vRNP Activity By Host Cell FactorsR21AI128556 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 2017 to 2018
$554k
NIAID NIH HHS R01 AI125626NIAID NIH HHS R21 AI128556NIH HHS S10 OD021831
6 · The paper itself

Abstract

Completion of the Lassa virus (LASV) life cycle critically depends on the activities of the virally encoded, RNA-dependent RNA polymerase in replication and transcription of the viral RNA genome in the cytoplasm of infected cells. The contribution of cellular proteins to these processes remains unclear. Here, we applied proximity proteomics to define the interactome of LASV polymerase in cells under conditions that recreate LASV RNA synthesis. We engineered a LASV polymerase-biotin ligase (TurboID) fusion protein that retained polymerase activity and successfully biotinylated the proximal proteome, which allowed the identification of 42 high-confidence LASV polymerase interactors. We subsequently performed a small interfering RNA (siRNA) screen to identify those interactors that have functional roles in authentic LASV infection. As proof of principle, we characterized eukaryotic peptide chain release factor subunit 3a (eRF3a/GSPT1), which we found to be a proviral factor that physically associates with LASV polymerase. Targeted degradation of GSPT1 by a small-molecule drug candidate, CC-90009, resulted in strong inhibition of LASV infection in cultured cells. Our work demonstrates the feasibility of using proximity proteomics to illuminate and characterize yet-to-be-defined host-pathogen interactome, which can reveal new biology and uncover novel targets for the development of antivirals against highly pathogenic RNA viruses.

Indexed as

AcetamidesAntiviral AgentsIsoindolesLassa virusPeptide Termination FactorsPiperidonesRNA-Dependent RNA PolymeraseViral ProteinsCell Line, TumorHumansLassa FeverProtein Interaction MapsProteolysisProteomeProteomicsAcetamidesAntiviral AgentsCC-90009Isoindolespeptide-chain-release factor 3Peptide Termination FactorsPiperidonesProteomeRNA-Dependent RNA PolymeraseViral Proteinsarenaviruseshost-directed antiviralshost-virus interactionsproximity proteomicsviral replication

Identifiers

PMID35858434
PMCPMC9340056
OpenAlexW4285731151

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.