Evidence map›Paper›PMID 35858344›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Genetic variation that determines

Victoria Walker-Sperling, Jean C Digitale, Mathias Viard, Maureen P Martin, Arman Bashirova, Yuko Yuki, Veron Ramsuran, Smita Kulkarni, Vivek Naranbhai, Hongchuan Li and 13 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  6. Review
  7. Genetic variation that determinesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 12 institutions in 4 countries.

Victoria Walker-SperlingLaboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, 20892.
Jean C DigitaleDepartment of Medicine, University of California San Francisco, San Francisco, California, 94158.
Mathias ViardLaboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, 20892.ORCID 0000-0002-1737-8021
Maureen P MartinLaboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, 20892.ORCID 0000-0002-0990-3500
Arman BashirovaLaboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, 20892.
Yuko YukiLaboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, 20892.ORCID 0000-0003-1721-6003
Veron RamsuranSchool of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa.
Smita KulkarniTexas Biomedical Research Institute, Host Pathogen Interaction Program, San Antonio, Texas, 78227.
Vivek NaranbhaiSchool of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa.ORCID 0000-0003-4281-8882
Hongchuan LiBasic Science Program, Frederick National Laboratory for Cancer Research, National Cancer Institute, Frederick, Maryland, 21702.ORCID 0000-0002-3501-4299
Stephen K AndersonBasic Science Program, Frederick National Laboratory for Cancer Research, National Cancer Institute, Frederick, Maryland, 21702.ORCID 0000-0002-7856-4266
Lauren YumU.S. Military HIV Research Program,, Walter Reed Army Institute of Research, Silver Spring, Maryland, 20910.
Robert CliffordU.S. Military HIV Research Program,, Walter Reed Army Institute of Research, Silver Spring, Maryland, 20910.
Hannah KibuukaMakerere University Walter Reed Project, Kampala, Uganda.
Julie AkeU.S. Military HIV Research Program,, Walter Reed Army Institute of Research, Silver Spring, Maryland, 20910.
Rasmi ThomasU.S. Military HIV Research Program,, Walter Reed Army Institute of Research, Silver Spring, Maryland, 20910.
Sarah Rowland-JonesViral Immunology Unit, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK.ORCID 0000-0001-5788-6998
John RekInfectious Diseases Research Collaboration, Kampala, Uganda.
Emmanuel ArinaitweInfectious Diseases Research Collaboration, Kampala, Uganda.
Moses KamyaInfectious Diseases Research Collaboration, Kampala, Uganda.ORCID 0000-0001-9106-4234
Isabel Rodriguez-BarraquerDepartment of Medicine, University of California San Francisco, San Francisco, California, 94158.ORCID 0000-0001-6784-1021
Margaret E FeeneyDepartment of Medicine, University of California San Francisco, San Francisco, California, 94158.
Mary CarringtonLaboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, 20892.ORCID 0000-0002-2692-2180
Frederick National Laboratory for Cancer Research · USInfectious Diseases Research Collaboration · UGUniversity of California, San Francisco · USHenry M. Jackson Foundation · USWalter Reed Army Institute of Research · USCentre for the AIDS Programme of Research in South Africa · ZAMakerere University Walter Reed Project · UGNational Cancer Institute · USRagon Institute of MGH, MIT and Harvard · USTexas Biomedical Research Institute · USUniversity of KwaZulu-Natal · ZAUniversity of Oxford · GB

Funding

Effects of genetic polymorphism in MHC, KIR, and related loci on human diseaseZIABC010791 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$18.2M
Molecular Studies of Cellular CytotoxicityZIABC010013 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ANDERSON, STEPHEN K · 2009 to 2025
$17.2M
The role of γδ T cells in fetal and infant immune defense against malariaR01AI093615 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FEENEY, MARGARET E · 2011 to 2025
$9.1M
Multidisciplinary HIV Training ProgramT32AI007387 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Daniel R. Kuritzkes · 1990 to 2026
$8.8M
Role of cellular long non-coding RNAs in HIV replication and disease outcomeR01AI157850 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI KULKARNI, SMITA · 2022 to 2025
$2.0M
Mentoring Translational Researchers for Careers in Pediatric Global HealthK24AI113002 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FEENEY, MARGARET E · 2014 to 2023
$1.9M
HIV- induced long non-coding RNAs in viral replication and immune responseR56AI150371 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI KULKARNI, SMITA · 2020 to 2020
$490k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENIAID NIH HHS K24 AI113002NIAID NIH HHS R01 AI093615NIAID NIH HHS R01 AI157850NIAID NIH HHS R56 AI150371NIAID NIH HHS T32 AI007387
6 · The paper itself

Abstract

HLA class I (HLA-I) allotypes vary widely in their dependence on tapasin (TAPBP), an integral component of the peptide-loading complex, to present peptides on the cell surface. We identified two single-nucleotide polymorphisms that regulate

Indexed as

Histocompatibility Antigens Class IMalaria, FalciparumMembrane Transport ProteinsPlasmodium falciparumBinding SitesGenetic VariationHumansMicroRNAsPeptidesRNA, MessengerTranscription Factor AP-2Histocompatibility Antigens Class IMembrane Transport ProteinsMicroRNAsMIRN4486 microRNA, humanPeptidesRNA, MessengertapasinTranscription Factor AP-2HLAmalariatapasin

Identifiers

PMID35858344
PMCPMC9303992
OpenAlexW4285084497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.