Evidence map›Paper›PMID 35858326›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Sox9 directs divergent epigenomic states in brain tumor subtypes.

Debosmita Sardar, Hsiao-Chi Chen, Amanda Reyes, Srinidhi Varadharajan, Antrix Jain, Carrie Mohila, Rachel Curry, Brittney Lozzi, Kavitha Rajendran, Alexis Cervantes and 5 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Hp1bp3 loss links chromatin reorganization to metabolic vulnerability in glioma.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
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  6. Review
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  9. LncRNA-Mediated TPI1 and PKM2 Promote Self-Renewal and Chemoresistance in GBM.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Sox9 directs divergent epigenomic states in brain tumor subtypes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Debosmita SardarCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Hsiao-Chi ChenCancer Cell Biology Graduate Program, Baylor College of Medicine, Houston, TX 77030.
Amanda ReyesCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Srinidhi VaradharajanDepartment of Developmental Neurobiology, Neurobiology and Brain Tumor Program, St. Jude Children's Research Hospital, Memphis, TN 38105.ORCID 0000-0002-2033-0758
Antrix JainMass Spectrometry Proteomics Core, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-2815-3645
Carrie MohilaDepartment of Pathology, Texas Children's Hospital, Houston, TX 77030.
Rachel CurryCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Brittney LozziCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Kavitha RajendranCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Alexis CervantesCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Kwanha YuCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Ali JalaliDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX 77030.
Ganesh RaoDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX 77030.
Stephen C MackDepartment of Developmental Neurobiology, Neurobiology and Brain Tumor Program, St. Jude Children's Research Hospital, Memphis, TN 38105.
Benjamin DeneenCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX 77030.
Baylor College of Medicine · USSt. Jude Children's Research Hospital · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Transcriptional regulation of gliogenesis in the CNSR01NS071153 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN · 2010 to 2022
$5.0M
Integrative bioinformatics and functional characterization of oncogenic driver aberrations in cancerU01CA217842 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DENEEN, BENJAMIN, MILLS, GORDON B. · 2017 to 2021
$3.6M
Deciphering the Role of Aberrant Endogenous Retroviral Expression in Onco-histone Driven GliomaR01NS116361 · NINDS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Stephen C Mack · 2021 to 2026
$2.5M
MODELING MALIGNANT PROGRESSION IN GLIOMAR01NS094615 · NINDS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI RAO, GANESH · 2016 to 2020
$1.8M
Cellular and Molecular Mechanisms of GBM InfiltrationR01NS124093 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI Benjamin Deneen, Ganesh Rao · 2022 to 2026
$1.6M
Role of POT1 mutations in glioma initiationK08NS110976 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI JALALI, ALI · 2019 to 2023
$880k
Functional Genomics of High Grade GliomaR50CA252125 · NCI · BAYLOR COLLEGE OF MEDICINE · PI YU, KWANHA · 2020 to 2024
$761k
THERMO SCIENTIFIC Q EXACTIVE HF-X HYBRID QUADRUPOLE-ORBITRAP MASS SPECTROMETERS10OD026804 · OD · BAYLOR COLLEGE OF MEDICINE · PI MALOVANNAYA, ANNA · 2019 to 2019
$717k
Astrocyte transcriptional responses to neuronal activity in the olfactory bulbK99DC019668 · NIDCD · BAYLOR COLLEGE OF MEDICINE · PI SARDAR, DEBOSMITA · 2022 to 2023
$198k
NCI NIH HHS P30 CA125123NCI NIH HHS R50 CA252125NCI NIH HHS U01 CA217842NIDCD NIH HHS K99 DC019668NIH HHS S10 OD026804NINDS NIH HHS K08 NS110976NINDS NIH HHS R01 NS071153NINDS NIH HHS R01 NS094615NINDS NIH HHS R01 NS116361NINDS NIH HHS R01 NS124093
6 · The paper itself

Abstract

Epigenetic dysregulation is a universal feature of cancer that results in altered patterns of gene expression that drive malignancy. Brain tumors exhibit subtype-specific epigenetic alterations; however, the molecular mechanisms responsible for these diverse epigenetic states remain unclear. Here, we show that the developmental transcription factor Sox9 differentially regulates epigenomic states in high-grade glioma (HGG) and ependymoma (EPN). Using our autochthonous mouse models, we found that Sox9 suppresses HGG growth and expands associated H3K27ac states, while promoting ZFTA-RELA (ZR

Indexed as

Brain NeoplasmsEpendymomaEpigenesis, GeneticSOX9 Transcription FactorAnimalsCarcinogenesisMiceNeoplasms, ExperimentalSox9 protein, mouseSOX9 Transcription Factorependymomaepigeneticshigh-grade gliomahistonetranscription

Identifiers

PMID35858326
PMCPMC9303974
OpenAlexW4285493190

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.