Evidence map›Paper›PMID 35857148›Full record

ArticleArchives of virology2022

Identification of two novel putative satellite RNAs with hammerhead structures in the virome of French and Spanish carrot samples.

B M Babalola, D Schönegger, C Faure, A Marais, A Fraile, F Garcia-Arenal, T Candresse

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

B M BabalolaCentro de Biotecnología y Genómica de Plantas UPM-INIA, E.T.S.I. Agronómica, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Pozuelo de Alarcón, 28223, Madrid, Spain.
D SchöneggerUniv. Bordeaux, INRAE, UMR BFP, CS 20032, 33882, Villenave d'Ornon Cedex, France.
C FaureUniv. Bordeaux, INRAE, UMR BFP, CS 20032, 33882, Villenave d'Ornon Cedex, France.
A MaraisUniv. Bordeaux, INRAE, UMR BFP, CS 20032, 33882, Villenave d'Ornon Cedex, France.ORCID http://orcid.org/0000-0003-2482-1543
A FraileCentro de Biotecnología y Genómica de Plantas UPM-INIA, E.T.S.I. Agronómica, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Pozuelo de Alarcón, 28223, Madrid, Spain.
F Garcia-ArenalCentro de Biotecnología y Genómica de Plantas UPM-INIA, E.T.S.I. Agronómica, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Pozuelo de Alarcón, 28223, Madrid, Spain.
T CandresseUniv. Bordeaux, INRAE, UMR BFP, CS 20032, 33882, Villenave d'Ornon Cedex, France. thierry.candresse@inrae.fr.ORCID http://orcid.org/0000-0001-9757-1835
Université de Bordeaux · FRCentre for Plant Biotechnology and Genomics · ES

Funding

FP7 People: Marie-Curie Actions GA 813542
6 · The paper itself

Abstract

Carrot virome analysis using high-throughput sequencing revealed the presence of two RNA molecules with properties of satellite RNAs that are homologous to the satellite RNA of cereal yellow dwarf virus-RPV (CYDV-RPV). Satellite 1 is 298 nt long, while satellite 2 is 368 nt long. Their positive and negative genome strands contain hammerhead ribozymes similar to those found in other self-cleaving satellite RNAs. While both satellites were detected in Spanish carrot populations, only satellite 2 was found in French carrot populations. The most likely helper virus for these two satellites is carrot red leaf virus (CtRLV), which, like CYDV-RPV, is a polerovirus.

Indexed as

Daucus carotaLuteoviridaeRNA, CatalyticBase SequenceRNA, SatelliteRNA, ViralViromeRNA, CatalyticRNA, SatelliteRNA, Viral

Identifiers

PMID35857148
OpenAlexW4285900336

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.