Evidence map›Paper›PMID 35857142›Full record

ArticleArchives of microbiology2022

Peptoniphilus coli sp. nov. and Peptoniphilus urinae sp. nov., isolated from humans.

Babacar Mbaye, Cheikh Ibrahima Lo, Niokhor Dione, Sarah Benabdelkader, Maryam Tidjani Alou, Samy Brahimi, Nicholas Armstrong, Stéphane Alibar, Didier Raoult, Valérie Moal and 3 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Archives of microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Babacar MbayeAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Cheikh Ibrahima LoIHU-Méditerranée Infection, Institut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13385, Marseille cedex 05, France.
Niokhor DioneAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Sarah BenabdelkaderAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Maryam Tidjani AlouAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Samy BrahimiAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Nicholas ArmstrongAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Stéphane AlibarIHU-Méditerranée Infection, Institut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13385, Marseille cedex 05, France.
Didier RaoultAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Valérie MoalAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Matthieu MillionAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Pierre-Edouard FournierIHU-Méditerranée Infection, Institut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13385, Marseille cedex 05, France.
Florence FenollarIHU-Méditerranée Infection, Institut Hospitalo-Universitaire Méditerranée-Infection, 19-21 Boulevard Jean Moulin, 13385, Marseille cedex 05, France. florence.fenollar@univ-amu.fr.ORCID http://orcid.org/0000-0002-7517-0173
Aix-Marseille Université · FRMéditerranée Infection Foundation · FR

Funding

Agence Nationale de la Recherche 10-IAHU-03
6 · The paper itself

Abstract

Strains Marseille-P3761 and Marseille-P3195 are representatives of two bacterial species isolated from human specimens. Strain Marseille-P3761 was isolated from the stool of a healthy volunteer, while strain Marseille-P3915 was cultivated from the urine of a kidney transplant recipient. Both strains are anaerobic Gram-positive coccoid bacteria. Both are catalase-negative and oxidase-negative and grow optimally at 37 °C in anaerobic conditions. They also metabolize carbohydrates, such as galactose, glucose, fructose, and glycerol. The major fatty acids were hexadecanoic acid for both strains. The highest digital DNA-DNA hybridization (dDDH) values of Marseille-P3761 and Marseille-P3195 strains when compared to their closest phylogenetic relatives were 52.3% and 56.4%, respectively. Strains Marseille-P3761 and Marseille-P3195 shared an OrthoANI value of 83.5% which was the highest value found with Peptoniphilus species studied here. The morphological, biochemical, phenotypic and genomic characteristics strongly support that these strains are new members of the Peptoniphilus genus. Thus, we suggest that Peptoniphilus coli sp. nov., and Peptoniphilus urinae sp. nov., are new species for which strains Marseille-P3761 (CSUR P3761 = CCUG 71,569) and Marseille-P3195 (CSUR P3195 = DSM 103,468) are their type strains, respectively of two new Peptoniphilus species, for which we propose the names Peptoniphilus coli sp. nov. and Peptoniphilus urinae sp. nov., respectively.

Indexed as

EubacterialesGram-Positive BacteriaBacteria, AnaerobicBacterial Typing TechniquesDNA, BacterialFatty AcidsHumansPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialFatty AcidsRNA, Ribosomal, 16SBacteriaHuman microbiotaKidney transplantPeptoniphilus coli sp. nov.Peptoniphilus urinaeTaxonogenomics

Identifiers

PMID35857142
PMCPMC9300514
OpenAlexW4286209546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.