Evidence map›Paper›PMID 35856674›Full record

ArticleJournal of virology2022

Detecting Sources of Immune Activation and Viral Rebound in HIV Infection.

Stephen W Wietgrefe, Lijie Duan, Jodi Anderson, Guillermo Marqués, Mark Sanders, Nathan W Cummins, Andrew D Badley, Curtis Dobrowolski, Jonathan Karn, Amélie Pagliuzza and 11 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Review
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  9. Alternative substitutions of N332 in HIV-1bioRxiv : the preprint server for biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

Stephen W Wietgrefe *Department of Microbiology and Immunology, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Lijie Duan *Department of Microbiology and Immunology, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Jodi Anderson *Department of Medicine, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Guillermo MarquésUniversity Imaging Centers, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Mark SandersUniversity Imaging Centers, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Nathan W CumminsMayo Clinicgrid.66875.3a and Research Foundation, Rochester, Minnesota, USA.ORCID 0000-0002-0703-1550
Andrew D BadleyMayo Clinicgrid.66875.3a and Research Foundation, Rochester, Minnesota, USA.
Curtis DobrowolskiDepartment of Molecular Biology and Microbiology, Case Western Reserve Universitygrid.67105.35, Cleveland, Ohio, USA.
Jonathan KarnDepartment of Molecular Biology and Microbiology, Case Western Reserve Universitygrid.67105.35, Cleveland, Ohio, USA.
Amélie PagliuzzaCentre du Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Quebec, Canada.
Nicolas ChomontCentre du Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Quebec, Canada.
Gérémy SannierCentre du Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Quebec, Canada.
Mathieu DubéCentre du Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Quebec, Canada.
Daniel E KaufmannCentre du Recherche du Centre Hospitalier de l'Université de Montréal (CRCHUM), Montréal, Quebec, Canada.
Paul ZuckMerck & Co., Inc., Kenilworth, New Jersey, USA.
Guoxin WuMerck & Co., Inc., Kenilworth, New Jersey, USA.
Bonnie J HowellMerck & Co., Inc., Kenilworth, New Jersey, USA.
Cavan ReillyDivision of Biostatistics, School of Public Health, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Alon HerschhornDepartment of Medicine, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Timothy W SchackerDepartment of Medicine, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Ashley T HaaseDepartment of Microbiology and Immunology, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
University of Minnesota · USCentre Hospitalier de l’Université de Montréal · CAMerck & Co., Inc., Rahway, NJ, USA (United States) · USCase Western Reserve University · USMayo Clinic · US

Funding

Prime shock and kill for HIV erradicationR01AI110173 · NIAID · MAYO CLINIC ROCHESTER · PI BADLEY, ANDREW D · 2014 to 2024
$6.9M
A New Approach to Reactivating HIV from LatencyR01AI134406 · NIAID · UNIVERSITY OF MINNESOTA · PI HAASE, ASHLEY T. · 2017 to 2021
$2.9M
Evaluating the role of the novel apoptosis inhibitor TRAILshort, in maintaining HIV persistence.R01AI120698 · NIAID · MAYO CLINIC ROCHESTER · PI BADLEY, ANDREW D · 2015 to 2019
$2.5M
Direct Approach to Identifying Sources of Rebound in Lymphatic Tissue after Treatment InterruptionR21AI136731 · NIAID · UNIVERSITY OF MINNESOTA · PI HAASE, ASHLEY T. · 2018 to 2019
$423k
BCL2 family proteins promote HIV-1 persistenceR56AI145407 · NIAID · MAYO CLINIC ROCHESTER · PI CUMMINS, NATHAN WILLIAM · 2019 to 2019
$398k
Gouvernement du Canada | Canadian Institutes of Health Research (IRSC) CIHR 152977Gouvernement du Canada | Canadian Institutes of Health Research (IRSC) CIHR 364408NIAID NIH HHS R01 AI110173NIAID NIH HHS R01 AI120698NIAID NIH HHS R01 AI134406NIAID NIH HHS R21 AI136731NIAID NIH HHS R56 AI145407
6 · The paper itself

Abstract

Anti-retroviral therapy (ART) generally suppresses HIV replication to undetectable levels in peripheral blood, but immune activation associated with increased morbidity and mortality is sustained during ART, and infection rebounds when treatment is interrupted. To identify drivers of immune activation and potential sources of viral rebound, we modified RNAscope in situ hybridization to visualize HIV-producing cells as a standard against which to compare the following assays of potential sources of immune activation and virus rebound following treatment interruption: (i) envelope detection by induced transcription-based sequencing (EDITS) assay; (ii) HIV-Flow; (iii) Flow-FISH assays that can scan tissues and cell suspensions to detect rare cells expressing env mRNA, gag mRNA/Gag protein and p24; and (iv) an ultrasensitive immunoassay that detects p24 in cell/tissue lysates at subfemtomolar levels. We show that the sensitivities of these assays are sufficient to detect one rare HIV-producing/env mRNA

Indexed as

HIV-1HIV InfectionsRNA, ViralViral TropismVirus ActivationAntigens, ViralAnti-HIV AgentsCD4-Positive T-Lymphocytesenv Gene Products, Human Immunodeficiency VirusHIV Core Protein p24HumansImmunoassayIn Situ Hybridization, FluorescenceReproducibility of ResultsRNA, MessengerSensitivity and SpecificityAntigens, ViralAnti-HIV Agentsenv Gene Products, Human Immunodeficiency VirusHIV Core Protein p24RNA, MessengerRNA, ViralHIVimmune activationviral rebound

Identifiers

PMID35856674
PMCPMC9364797
OpenAlexW4286001090

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.