Evidence map›Paper›PMID 35854039›Full record

ArticleScientific reports2022

Automatic parameter selection for electron ptychography via Bayesian optimization.

Michael C Cao, Zhen Chen, Yi Jiang, Yimo Han

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Michael C CaoDepartment of Materials Science and NanoEngineering, Rice University, Houston, TX, 77005, USA.
Zhen ChenSchool of Materials Science and Engineering, Tsinghua University, Beijing, 100084, China.
Yi JiangAdvanced Photon Source, Argonne National Laboratory, Lemont, IL, 60439, USA. yjiang@anl.gov.
Yimo HanDepartment of Materials Science and NanoEngineering, Rice University, Houston, TX, 77005, USA. yh76@rice.edu.

Funding

U.S. Department of Energy DE-AC02-06CH11357Welch Foundation C-2065-20210327
6 · The paper itself

Abstract

Electron ptychography provides new opportunities to resolve atomic structures with deep sub-angstrom spatial resolution and to study electron-beam sensitive materials with high dose efficiency. In practice, obtaining accurate ptychography images requires simultaneously optimizing multiple parameters that are often selected based on trial-and-error, resulting in low-throughput experiments and preventing wider adoption. Here, we develop an automatic parameter selection framework to circumvent this problem using Bayesian optimization with Gaussian processes. With minimal prior knowledge, the workflow efficiently produces ptychographic reconstructions that are superior to those processed by experienced experts. The method also facilitates better experimental designs by exploring optimized experimental parameters from simulated data.

Identifiers

PMID35854039
PMCPMC9296498

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.