Evidence map›Paper›PMID 35854001›Full record

ArticleCommunications biology2022

Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A).

Masamichi Nagae, Tetsuya Hirata, Hiroaki Tateno, Sushil K Mishra, Noriyoshi Manabe, Naoko Osada, Yuko Tokoro, Yoshiki Yamaguchi, Robert J Doerksen, Toshiyuki Shimizu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Masamichi NagaeDepartment of Molecular Immunology, Research Institute for Microbial Diseases, Osaka University, Suita, Japan. mnagae@biken.osaka-u.ac.jp.ORCID 0000-0002-5470-3807
Tetsuya HirataInstitute for Glyco-core Research (iGCORE), Gifu University, Gifu, Japan.
Hiroaki TatenoCellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.ORCID 0000-0003-3006-1659
Sushil K MishraGlycoscience Center of Research Excellence, Department of BioMolecular Sciences, University of Mississippi, University, Mississippi, MS, USA.ORCID 0000-0002-3080-9754
Noriyoshi ManabeDivision of Structural Glycobiology, Institute of Molecular Biomembrane and Glycobiology, Tohoku Medical and Pharmaceutical University, Sendai, Miyagi, Japan.ORCID 0000-0002-8866-0526
Naoko OsadaInstitute for Glyco-core Research (iGCORE), Gifu University, Gifu, Japan.
Yuko TokoroInstitute for Glyco-core Research (iGCORE), Gifu University, Gifu, Japan.
Yoshiki YamaguchiDivision of Structural Glycobiology, Institute of Molecular Biomembrane and Glycobiology, Tohoku Medical and Pharmaceutical University, Sendai, Miyagi, Japan.
Robert J DoerksenGlycoscience Center of Research Excellence, Department of BioMolecular Sciences, University of Mississippi, University, Mississippi, MS, USA.ORCID 0000-0002-3789-1842
Toshiyuki ShimizuFaculty of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-0547-8922
Yasuhiko KizukaInstitute for Glyco-core Research (iGCORE), Gifu University, Gifu, Japan. kizuka@gifu-u.ac.jp.ORCID 0000-0002-3181-9743
Gifu University · JPTohoku Medical and Pharmaceutical University · JPUniversity of Mississippi · USNational Institute of Advanced Industrial Science and Technology · JPThe University of Osaka · JPThe University of Tokyo · JP

Funding

Tracking Glycosylation State with Fluorinated Glycosides ProbesP20GM130460 · NIGMS · UNIVERSITY OF MISSISSIPPI · PI Joshua S Sharp · 2020 to 2026
$17.9M
NIGMS NIH HHS P20 GM130460U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) P20GM130460
6 · The paper itself

Abstract

N-Glycosylation is a common post-translational modification, and the number of GlcNAc branches in N-glycans impacts glycoprotein functions. N-Acetylglucosaminyltransferase-IVa (GnT-IVa, also designated as MGAT4A) forms a β1-4 GlcNAc branch on the α1-3 mannose arm in N-glycans. Downregulation or loss of GnT-IVa causes diabetic phenotypes by dysregulating glucose transporter-2 in pancreatic β-cells. Despite the physiological importance of GnT-IVa, its structure and catalytic mechanism are poorly understood. Here, we identify the lectin domain in mouse GnT-IVa's C-terminal region. The crystal structure of the lectin domain shows structural similarity to a bacterial GlcNAc-binding lectin. Comprehensive glycan binding assay using 157 glycans and solution NMR reveal that the GnT-IVa lectin domain selectively interacts with the product N-glycans having a β1-4 GlcNAc branch. Point mutation of the residue critical to sugar recognition impairs the enzymatic activity, suggesting that the lectin domain is a regulatory subunit for efficient catalytic reaction. Our findings provide insights into how branching structures of N-glycans are biosynthesized.

Indexed as

Insulin-Secreting CellsN-AcetylglucosaminyltransferasesAnimalsGlycosylationLectinsMicePolysaccharidesLectinsN-AcetylglucosaminyltransferasesPolysaccharides

Identifiers

PMID35854001
PMCPMC9296478
OpenAlexW4285797527

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.