Evidence map›Paper›PMID 35853876›Full record

ArticleNature communications2022

Genomic insights into the secondary aquatic transition of penguins.

Theresa L Cole, Chengran Zhou, Miaoquan Fang, Hailin Pan, Daniel T Ksepka, Steven R Fiddaman, Christopher A Emerling, Daniel B Thomas, Xupeng Bi, Qi Fang and 30 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genomic Distortion of Jawed Vertebrate Phylogeny.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Linking phenotype to genotype using comprehensive genomic comparisons.Current opinion in genetics & development · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Nonlinear vocal phenomena in African penguin begging calls: occurrence, significance and potential applications.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Theresa L Cole *Villum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark. tesscole1990@gmail.com.ORCID 0000-0002-0197-286X
Chengran Zhou *BGI-Shenzhen, Shenzhen, 518083, China.ORCID 0000-0002-9468-5973
Miaoquan Fang *BGI-Shenzhen, Shenzhen, 518083, China.
Hailin PanBGI-Shenzhen, Shenzhen, 518083, China.
Daniel T KsepkaBruce Museum, Greenwich, CT, 06830, USA.
Steven R FiddamanDepartment of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, OX1 3SZ, UK.ORCID 0000-0001-8222-7687
Christopher A EmerlingBiology Department, Reedley College, Reedley, CA, 93654, USA.ORCID 0000-0002-7722-7305
Daniel B ThomasSchool of Natural Sciences, Massey University, Auckland, 0632, New Zealand.ORCID 0000-0001-7679-0991
Xupeng BiBGI-Shenzhen, Shenzhen, 518083, China.
Qi FangBGI-Shenzhen, Shenzhen, 518083, China.ORCID 0000-0002-9181-8689
Martin R EllegaardCenter for Evolutionary Hologenomicss, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353, Copenhagen, Denmark.ORCID 0000-0001-5777-091X
Shaohong FengBGI-Shenzhen, Shenzhen, 518083, China.ORCID 0000-0002-2462-7348
Adrian L SmithDepartment of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, OX1 3SZ, UK.ORCID 0000-0002-7657-6191
Tracy A HeathDepartment of Ecology, Evolution, and Organismal Biology, Iowa State University, 2200 Osborn Dr., Ames, IA, 50011, USA.ORCID 0000-0002-0087-2541
Alan J D TennysonMuseum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6140, New Zealand.
Pablo García BorborogluCenter for Ecosystem Sentinels, Department of Biology, University of Washington, Seattle, WA, 98195, USA.ORCID 0000-0002-9031-5561
Jamie R WoodSchool of Biological Sciences, Faculty of Science, Engineering and Technology, University of Adelaide, North Terrace Campus, Adelaide, SA, 5005, Australia.ORCID 0000-0001-8008-6083
Peter W HaddenDepartment of Ophthalmology, New Zealand National Eye Centre, Faculty of Medical and Health Sciences, University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.
Stefanie GrosserDepartment of Zoology, University of Otago, Dunedin, 9054, New Zealand.ORCID 0000-0002-1524-7255
Charles-André BostCentre d'Etudes Biologiques de Chizé (CEBC), UMR 7372 du CNRS-La Rochelle Université, 79360, Villiers-en-Bois, France.
Yves CherelCentre d'Etudes Biologiques de Chizé (CEBC), UMR 7372 du CNRS-La Rochelle Université, 79360, Villiers-en-Bois, France.ORCID 0000-0001-9469-9489
Thomas MatternDepartment of Zoology, University of Otago, Dunedin, 9054, New Zealand.
Tom HartDepartment of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, OX1 3SZ, UK.
Mikkel-Holger S SindingCenter for Evolutionary Hologenomicss, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353, Copenhagen, Denmark.ORCID 0000-0003-1371-219X
Lara D ShepherdMuseum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6140, New Zealand.ORCID 0000-0002-7136-0017
Richard A PhillipsBritish Antarctic Survey, Natural Environment Research Council, High Cross, Cambridge, CB3 0ET, UK.
Petra QuillfeldtDepartment of Animal Ecology and Systematics, Justus-Liebig-Universität Giessen, Heinrich-Buff-Ring 26, 35392, Giessen, Germany.
Juan F MaselloDepartment of Animal Ecology and Systematics, Justus-Liebig-Universität Giessen, Heinrich-Buff-Ring 26, 35392, Giessen, Germany.ORCID 0000-0002-6826-4016
Juan L BouzatDepartment of Biological Sciences, Bowling Green State University, Bowling Green, OH, 43403, USA.ORCID 0000-0001-9075-1809
Peter G RyanFitzPatrick Institute of African Ornithology, University of Cape Town, Rondebosch, 7701, South Africa.ORCID 0000-0002-3356-2056
David R ThompsonNational Institute of Water and Atmospheric Research Ltd., Private Bag 14901, Kilbirnie, Wellington, 6241, New Zealand.
Ursula EllenbergGlobal Penguin Society, Puerto Madryn, 9120, Argentina.
Peter DannResearch Department, Phillip Island Nature Parks, PO Box 97, Cowes, Phillip Island, Cowes, VIC, 3922, Australia.ORCID 0000-0002-3044-701X
Gary MillerDivision of Pathology and Laboratory Medicine, University of Western Australia, Crawley, WA, 6009, Australia.
P Dee BoersmaCenter for Ecosystem Sentinels, Department of Biology, University of Washington, Seattle, WA, 98195, USA.
Ruoping ZhaoState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
M Thomas P GilbertCenter for Evolutionary Hologenomicss, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1353, Copenhagen, Denmark.
Huanming YangBGI-Shenzhen, Shenzhen, 518083, China.
De-Xing ZhangCenter for Computational and Evolutionary Biology & State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, 1 Beichen West Road, Beijing, 100101, China.ORCID 0000-0002-9114-8996
Guojie ZhangVillum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark. guojiezhang@zju.edu.cn.ORCID 0000-0001-6860-1521

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Penguins lost the ability to fly more than 60 million years ago, subsequently evolving a hyper-specialized marine body plan. Within the framework of a genome-scale, fossil-inclusive phylogeny, we identify key geological events that shaped penguin diversification and genomic signatures consistent with widespread refugia/recolonization during major climate oscillations. We further identify a suite of genes potentially underpinning adaptations related to thermoregulation, oxygenation, diving, vision, diet, immunity and body size, which might have facilitated their remarkable secondary transition to an aquatic ecology. Our analyses indicate that penguins and their sister group (Procellariiformes) have the lowest evolutionary rates yet detected in birds. Together, these findings help improve our understanding of how penguins have transitioned to the marine environment, successfully colonizing some of the most extreme environments on Earth.

Indexed as

SpheniscidaeAnimalsBiological EvolutionFossilsGenomeGenomicsPhylogeny

Identifiers

PMID35853876
PMCPMC9296559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.