ArticleNature genetics2022
Reference genome assemblies reveal the origin and evolution of allohexaploid oat.
Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.
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100 citing papers in PubMed.
- Dynamic evolution and hierarchical regulation of rDNA in polyploid oat.The Plant journal : for cell and molecular biology · 2026Article
- Genome-Wide Characterization of Nuclear Factor Y (NF-Y) Transcription Factors in Allohexaploid Oat.Plants (Basel, Switzerland) · 2026Article
- Genomic and genetic dissection underlying seedling drought resilience in oats.Nature communications · 2026Article
- Characterization of oat chromosome rearrangements in advanced breeding lines and implications for genetic improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Transposable element dynamics drive rapid evolution of centromere architecture in the Avena genus.Genome biology · 2026Article
- Assembly and comparative analysis of the complete mitochondrial genome of hexaploid oat (Avena sativa).BMC plant biology · 2026Article
- GWAS and genomic prediction of crown rust resistance in the southern US elite oat (Avena sativa L.) germplasm.The plant genome · 2026Article
- Research progress of omics technologies in forage breeding.Fundamental research · 2026Review
- Article
- Genome-Wide Identification and Characterization of thePlants (Basel, Switzerland) · 2026Article
- Hybridization and Polyploidy Shaped the Evolutionary History of a Complex of Cryptic Species in European Woodrushes (Luzula sect. Luzula).Systematic biology · 2026Article
- Article
- Genome-Wide Identification and Functional Studies of the APX Gene Family in Oat (Life (Basel, Switzerland) · 2026Article
- Accessing crop genetic diversity via pangenomics.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genome-Wide Association Study on Lodging Resistance-Related Traits in Oats.Plants (Basel, Switzerland) · 2026Article
- Effectiveness of low-density high-throughput marker platform and easy-to-measure traits for genomic prediction of biomass yield in oat (Avena sativa L.).The plant genome · 2026Article
- Genome-wide association study uncovers the genetic basis of stem rust resistance in the southern US oat (Avena sativa L.) germplasm at different growth stages.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genome-wide identification and expression profiling of the NHX gene family in oat (Avena sativa L.).BMC genomics · 2026Article
- QTL mapping of oat crown rust resistance in Australian fields and identification of a seedling resistance locus in oat line GS7.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Comprehensive Investigation of GRF Transcription Factors and Associated Responses to Drought Stress in Oat (Plants (Basel, Switzerland) · 2026Article
40 more citing papers are in PubMed but not listed here.
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33 authors.
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Abstract
Common oat (Avena sativa) is an important cereal crop serving as a valuable source of forage and human food. Although reference genomes of many important crops have been generated, such work in oat has lagged behind, primarily owing to its large, repeat-rich polyploid genome. Here, using Oxford Nanopore ultralong sequencing and Hi-C technologies, we have generated a reference-quality genome assembly of hulless common oat, comprising 21 pseudomolecules with a total length of 10.76 Gb and contig N50 of 75.27 Mb. We also produced genome assemblies for diploid and tetraploid Avena ancestors, which enabled the identification of oat subgenomes and provided insights into oat chromosomal evolution. The origin of hexaploid oat is inferred from whole-genome sequencing, chloroplast genomes and transcriptome assemblies of different Avena species. These findings and the high-quality reference genomes presented here will facilitate the full use of crop genetic resources to accelerate oat improvement.
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