Evidence map›Paper›PMID 35850933›Full record

ArticleeLife2022

Reconstruction of transmission chains of SARS-CoV-2 amidst multiple outbreaks in a geriatric acute-care hospital: a combined retrospective epidemiological and genomic study.

Mohamed Abbas, Anne Cori, Samuel Cordey, Florian Laubscher, Tomás Robalo Nunes, Ashleigh Myall, Julien Salamun, Philippe Huber, Dina Zekry, Virginie Prendki and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 4 countries.

Mohamed AbbasInfection Control Programme & WHO Collaborating Centre on Patient Safety, Geneva University Hospitals, Geneva, Switzerland.ORCID 0000-0002-7265-1887
Anne CoriMRC Centre for Global Infectious Disease Analysis, Imperial College London, London, United Kingdom.
Samuel CordeyFaculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-2684-5680
Florian LaubscherLaboratory of Virology, Department of Diagnostics, Geneva University Hospitals, Geneva, Switzerland.
Tomás Robalo NunesInfection Control Programme & WHO Collaborating Centre on Patient Safety, Geneva University Hospitals, Geneva, Switzerland.
Ashleigh MyallDepartment of Infectious Diseases, Imperial College London, London, United Kingdom.
Julien SalamunDepartment of Primary Care, Geneva University Hospitals, Geneva, Switzerland.
Philippe HuberDepartment of Rehabilitation and Geriatrics, Geneva University Hospitals, Geneva, Switzerland.
Dina ZekryDepartment of Rehabilitation and Geriatrics, Geneva University Hospitals, Geneva, Switzerland.
Virginie PrendkiDepartment of Rehabilitation and Geriatrics, Geneva University Hospitals, Geneva, Switzerland.
Anne ItenInfection Control Programme & WHO Collaborating Centre on Patient Safety, Geneva University Hospitals, Geneva, Switzerland.
Laure VieuxOccupational Health Service, Geneva University Hospitals, Geneva, Switzerland.
Valérie SauvanInfection Control Programme & WHO Collaborating Centre on Patient Safety, Geneva University Hospitals, Geneva, Switzerland.
Christophe E GrafDepartment of Rehabilitation and Geriatrics, Geneva University Hospitals, Geneva, Switzerland.
Stephan HarbarthInfection Control Programme & WHO Collaborating Centre on Patient Safety, Geneva University Hospitals, Geneva, Switzerland.
Geneva College · USUniversity of Geneva · CHImperial College London · GBHospital Garcia de Orta · PT

Funding

Medical Research Council MR/R015600/1
6 · The paper itself

Abstract

Background: There is ongoing uncertainty regarding transmission chains and the respective roles of healthcare workers (HCWs) and elderly patients in nosocomial outbreaks of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in geriatric settings. Methods: We performed a retrospective cohort study including patients with nosocomial coronavirus disease 2019 (COVID-19) in four outbreak-affected wards, and all SARS-CoV-2 RT-PCR positive HCWs from a Swiss university-affiliated geriatric acute-care hospital that admitted both Covid-19 and non-Covid-19 patients during the first pandemic wave in Spring 2020. We combined epidemiological and genetic sequencing data using a Bayesian modelling framework, and reconstructed transmission dynamics of SARS-CoV-2 involving patients and HCWs, to determine who infected whom. We evaluated general transmission patterns according to case type (HCWs working in dedicated Covid-19 cohorting wards: HCW Results: During the study period (1 March to 7 May 2020), we included 180 SARS-CoV-2 positive cases: 127 HCWs (91 HCW Conclusions: Most importation events were linked to HCW. Unexpectedly, transmission between HCW Funding: This study was supported by a grant from the Swiss National Science Foundation under the NRP78 funding scheme (Grant no. 4078P0_198363).

Indexed as

COVID-19Cross InfectionAgedBayes TheoremDisease OutbreaksGenomicsHospitalsHumansRetrospective StudiesSARS-CoV-2COVID-19geriatric hospitalshealthcare-associated infectioninfection preventioninfectious diseasemedicinemicrobiologynosocomial outbreaksSARS-CoV-2transmission dynamicsviruses

Identifiers

PMID35850933
PMCPMC9328768
OpenAlexW4285798554

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.