Evidence map›Paper›PMID 35850192›Full record

ArticleGastroenterology2022

An Exosome-based Transcriptomic Signature for Noninvasive, Early Detection of Patients With Pancreatic Ductal Adenocarcinoma: A Multicenter Cohort Study.

Kota Nakamura, Zhongxu Zhu, Souvick Roy, Eunsung Jun, Haiyong Han, Ruben M Munoz, Satoshi Nishiwada, Geeta Sharma, Derek Cridebring, Frederic Zenhausern and 18 more

3 registry-linked trialsOpen access · greenAbstract readMulticenter Study
In one paragraph

Article in Gastroenterology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 3 registered trials, which are not on this map. Cited by 106 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 3 pooled it
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06342427 completednot on this mapstarted 2023, after this paper: background citation

Early Detection of Stomach Cancer With a Liquid Biopsy Based on Exosomal Micro-RNA

TypeobservationalSponsorCity of Hope Medical CenterRan2023 to 2024Enrolled809ConditionsGastric Cancer, Gastric Adenocarcinoma, Gastric Cancer Stage, Gastric NeoplasmArmsDESTINEX
NCT06388967 recruitingnot on this mapstarted 2023, after this paper: background citation

Early Detection of Pancreatic Cancer: Prospective Study

TypeobservationalSponsorCity of Hope Medical CenterRan2023 to 2030Enrolled2,000ConditionsPancreatic Cancer, Pancreatic Carcinoma, Pancreatic Adenocarcinoma, Pancreatic Ductal AdenocarcinomaArmsPANcreatic cancer Exosome Early detectiON (PANXEON)
NCT07225452 completednot on this mapstarted 2024, after this paper: background citation

Liquid Biopsy Using Exosomal miRNA for Intrahepatic Cholangiocarcinoma Detection

TypeobservationalSponsorCity of Hope Medical CenterRan2024 to 2026Enrolled535ConditionsIntrahepatic Cholangiocarcinoma (Icc)ArmsSmall RNA sequencing, LUMIC assay
3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 3 syntheses or guidelines pooled it, 150 citations in OpenAlex.

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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 14 institutions in 5 countries.

Kota NakamuraDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, California.
Zhongxu ZhuDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, California; Department of Surgery, The Chinese University of Hong Kong. Prince of Wales Hospital, Shatin, N.T., Hong Kong, SAR, China; Department of Biomedical Sciences, City University of Hong Kong, Hong Kong SAR, China.
Souvick RoyDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, California.
Eunsung JunDivision of Hepatobiliary and Pancreatic Surgery, Department of Surgery, Ulsan University College of Medicine and Asan Medical Center, Seoul, Korea.
Haiyong HanThe Translational Genomics Research Institute, Phoenix, Arizona.
Ruben M MunozThe Translational Genomics Research Institute, Phoenix, Arizona.
Satoshi NishiwadaDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, California.
Geeta SharmaDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, California.
Derek CridebringThe Translational Genomics Research Institute, Phoenix, Arizona.
Frederic ZenhausernCenter for Applied NanoBioscience and Medicine, University of Arizona College of Medicine-Phoenix, Phoenix, Arizona.
Seungchan KimDepartment of Electrical and Computer Engineering, Roy G. Perry College of Engineering, Prairie View A&M University, Prairie View, Texas.
Denise J RoeDepartment of Epidemiology and Biostatistics, The University of Arizona, Tucson, Arizona.
Sourat DarabiHoag Family Center Institute, Newport Beach, California.
In-Woong HanDivision of Hepato-Biliary Pancreatic Surgery, Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Douglas B EvansDepartment of Surgery, The Medical College of Wisconsin, Milwaukee, Wisconsin.
Suguru YamadaDepartment of Gastroenterological Surgery, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Michael J DemeureThe Translational Genomics Research Institute, Phoenix, Arizona; Hoag Family Center Institute, Newport Beach, California.
Carlos BecerraBaylor Scott and White Research Institute, Baylor University Medical Center, Dallas, Texas.
Scott A CelinskiBaylor Scott and White Research Institute, Baylor University Medical Center, Dallas, Texas.
Erkut BorazanciHonorHealth Research Institute, Scottsdale, Arizona.
Susan TsaiDepartment of Surgery, The Medical College of Wisconsin, Milwaukee, Wisconsin.
Yasuhiro KoderaDepartment of Gastroenterological Surgery, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Joon Oh ParkDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
John S BoltonDepartment of Surgery, Ochsner Clinic Foundation, New Orleans, Louisiana.
Xin WangDepartment of Surgery, The Chinese University of Hong Kong. Prince of Wales Hospital, Shatin, N.T., Hong Kong, SAR, China. Electronic address: xinwang@cuhk.edu.hk.
Song Cheol KimDivision of Hepatobiliary and Pancreatic Surgery, Department of Surgery, Ulsan University College of Medicine and Asan Medical Center, Seoul, Korea. Electronic address: drksc@amc.seoul.kr.
Daniel Von HoffThe Translational Genomics Research Institute, Phoenix, Arizona. Electronic address: dvh@Tgen.org.
Ajay GoelDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Monrovia, California; City of Hope Comprehensive Cancer Center, Duarte, California. Electronic address: ajgoel@coh.org.
City of Hope · USTranslational Genomics Research Institute · USBaylor University Medical Center · USMedical College of Wisconsin · USNagoya University · JPPrairie View A&M University · USSamsung Medical Center · KRUniversity of Arizona · USAsan Medical Center · KRChinese University of Hong Kong · HKCity University of Hong Kong · HKHoag Memorial Hospital Presbyterian · USHonorHealth · USOchsner Medical Center · US

Funding

Noncoding RNA Biomarkers for Noninvasive and Early Detection of Pancreatic CancerU01CA214254 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Ajay Goel, DANIEL D VON HOFF · 2017 to 2026
$8.9M
NCI NIH HHS U01 CA214254
6 · The paper itself

Abstract

BACKGROUND &

aimsPancreatic ductal adenocarcinoma (PDAC) incidence is rising worldwide, and most patients present with an unresectable disease at initial diagnosis. Measurement of carbohydrate antigen 19-9 (CA19-9) levels lacks adequate sensitivity and specificity for early detection; hence, there is an unmet need to develop alternate molecular diagnostic biomarkers for PDAC. Emerging evidence suggests that tumor-derived exosomal cargo, particularly micro RNAs (miRNAs), offer an attractive platform for the development of cancer-specific biomarkers. Herein, genomewide profiling in blood specimens was performed to develop an exosome-based transcriptomic signature for noninvasive and early detection of PDAC.

methodsSmall RNA sequencing was undertaken in a cohort of 44 patients with an early-stage PDAC and 57 nondisease controls. Using machine-learning algorithms, a panel of cell-free (cf) and exosomal (exo) miRNAs were prioritized that discriminated patients with PDAC from control subjects. Subsequently, the performance of the biomarkers was trained and validated in independent cohorts (n = 191) using quantitative reverse transcription polymerase chain reaction (qRT-PCR) assays.

resultsThe sequencing analysis initially identified a panel of 30 overexpressed miRNAs in PDAC. Subsequently using qRT-PCR assays, the panel was reduced to 13 markers (5 cf- and 8 exo-miRNAs), which successfully identified patients with all stages of PDAC (area under the curve [AUC] = 0.98 training cohort; AUC = 0.93 validation cohort); but more importantly, was equally robust for the identification of early-stage PDAC (stages I and II; AUC = 0.93). Furthermore, this transcriptomic signature successfully identified CA19-9 negative cases (<37 U/mL; AUC = 0.96), when analyzed in combination with CA19-9 levels, significantly improved the overall diagnostic accuracy (AUC = 0.99 vs AUC = 0.86 for CA19-9 alone).

conclusionsIn this study, an exosome-based liquid biopsy signature for the noninvasive and robust detection of patients with PDAC was developed.

Indexed as

AdenocarcinomaCarcinoma, Pancreatic DuctalExosomesMicroRNAsPancreatic NeoplasmsBiomarkers, TumorCA-19-9 AntigenCarbohydratesCohort StudiesHumansTranscriptomeBiomarkers, TumorCA-19-9 AntigenCarbohydratesMicroRNAsDiagnostic BiomarkerExosomeLiquid BiopsymiRNA SignaturePancreatic Cancer

Identifiers

PMID35850192
PMCPMC9613527
OpenAlexW4285600552

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.