Evidence map›Paper›PMID 35849337›Full record

ArticleNucleic acids research2022

Exploration of DNA processing features unravels novel properties of ICE conjugation in Gram-positive bacteria.

Haifa Laroussi, Yanis Aoudache, Emilie Robert, Virginie Libante, Louise Thiriet, Dominique Mias-Lucquin, Badreddine Douzi, Yvonne Roussel, Isaure Chauvot de Beauchêne, Nicolas Soler and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Haifa LaroussiUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Yanis AoudacheUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Emilie RobertUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Virginie LibanteUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Louise ThirietUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Dominique Mias-LucquinUniversite de Lorraine, CNRS, Inria, LORIA, F-54000, Nancy, France.
Badreddine DouziUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Yvonne RousselUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Isaure Chauvot de BeauchêneUniversite de Lorraine, CNRS, Inria, LORIA, F-54000, Nancy, France.
Nicolas SolerUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.ORCID 0000-0002-4292-4020
Nathalie Leblond-BourgetUniversité de Lorraine, INRAE, DynAMic, F-54000, Nancy, France.
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrative and conjugative elements (ICEs) are important drivers of horizontal gene transfer in prokaryotes. They are responsible for antimicrobial resistance spread, a major current health concern. ICEs are initially processed by relaxases that recognize the binding site of oriT sequence and nick at a conserved nic site. The ICESt3/Tn916/ICEBs1 superfamily, which is widespread among Firmicutes, encodes uncanonical relaxases belonging to a recently identified family called MOBT. This family is related to the rolling circle replication initiators of the Rep_trans family. The nic site of these MOBT relaxases is conserved but their DNA binding site is still unknown. Here, we identified the bind site of RelSt3, the MOBT relaxase from ICESt3. Unexpectedly, we found this bind site distantly located from the nic site. We revealed that the binding of the RelSt3 N-terminal HTH domain is required for efficient nicking activity. We also deciphered the role of RelSt3 in the initial and final stages of DNA processing during conjugation. Especially, we demonstrated a strand transfer activity, and the formation of covalent DNA-relaxase intermediate for a MOBT relaxase.

Indexed as

Bacterial ProteinsConjugation, GeneticDNA NucleotidyltransferasesGram-Positive BacteriaInterspersed Repetitive SequencesBinding SitesDNA, BacterialGene Transfer, HorizontalPlasmidsBacterial ProteinsDNA, BacterialDNA NucleotidyltransferasesDNA relaxase

Identifiers

PMID35849337
PMCPMC9371924
OpenAlexW4285799977

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.