Evidence map›Paper›PMID 35849014›Full record

ArticleDatabase : the journal of biological databases and curation2022

GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics.

Marilyne Summo, Aurore Comte, Guillaume Martin, Pierrick Perelle, Eric M Weitz, Gaëtan Droc, Mathieu Rouard

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Marilyne SummoCIRAD, UMR AGAP Institut, Montpellier 34398, France.ORCID 0000-0002-9308-974X
Aurore ComteFrench Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier 34398, France.
Guillaume MartinCIRAD, UMR AGAP Institut, Montpellier 34398, France.ORCID 0000-0002-1801-7500
Pierrick PerelleCIRAD, UMR AGAP Institut, Montpellier 34398, France.
Eric M WeitzBioversity International, Parc Scientifique Agropolis II, 34397, Montpellier, France.
Gaëtan DrocCIRAD, UMR AGAP Institut, Montpellier 34398, France.ORCID 0000-0003-1849-1269
Mathieu RouardFrench Institute of Bioinformatics (IFB)-South Green Bioinformatics Platform, Bioversity, CIRAD, INRAE, IRD, Montpellier 34398, France.ORCID 0000-0003-0284-1885
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRBroad Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In silico chromosome painting is a technique by which contributions of distinct genetic groups are represented along chromosomes of hybrid individuals. This type of analysis is used to study the mechanisms by which these individuals were formed. Such techniques are well adapted to identify genetic groups contributing to these individuals as well as hybridization events. It can also be used to follow chromosomal recombinations that occurred naturally or were generated by selective breeding. Here, we present GeMo, a novel interactive web-based and user-oriented interface to visualize in a linear-based fashion results of in silico chromosome painting. To facilitate data input generation, a script to execute analytical commands is provided and an interactive data curation mode is supported to ensure consistency of the automated procedure. GeMo contains preloaded datasets from published studies on crop domestication but can be applied to other purposes, such as breeding programs Although only applied so far on plants, GeMo can handle data from animals as well. Database URL: https://gemo.southgreen.fr/.

Indexed as

Data CurationUser-Computer InterfaceAnimalsChromosomesDatabases, FactualInternet

Identifiers

PMID35849014
PMCPMC9290862
OpenAlexW4285745123

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.