Evidence map›Paper›PMID 35848927›Full record

ArticleNucleic acids research2022

Elucidation of structure-function relationships in Methanocaldococcus jannaschii RNase P, a multi-subunit catalytic ribonucleoprotein.

Hong-Duc Phan, Andrew S Norris, Chen Du, Kye Stachowski, Bela H Khairunisa, Vaishnavi Sidharthan, Biswarup Mukhopadhyay, Mark P Foster, Vicki H Wysocki, Venkat Gopalan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Archaeal RNA processing and regulation: expanding the functional landscape.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Hong-Duc PhanDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.
Andrew S NorrisDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.
Chen DuDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.
Kye StachowskiDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.
Bela H KhairunisaDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.
Vaishnavi SidharthanDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.
Biswarup MukhopadhyayDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.
Mark P FosterDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.ORCID 0000-0001-9645-7491
Vicki H WysockiDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.
Venkat GopalanDepartment of Chemistry and Biochemistry, Columbus, OH 43210, USA.ORCID 0000-0002-3016-2719
Columbus Center · USVirginia Tech · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI WYSOCKI, VICKI H. · 2018 to 2022
$7.6M
Structure and Function in Catalytic RNP AssemblyR01GM067807 · NIGMS · OHIO STATE UNIVERSITY · PI FOSTER, MARK P. · 2004 to 2009
$1.7M
Protein Dynamics in Site-Specific DNA RecombinationR01GM122432 · NIGMS · OHIO STATE UNIVERSITY · PI FOSTER, MARK P. · 2017 to 2020
$1.1M
Typhoon FLA9500 Biomedical ImagerS10OD023582 · OD · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH · 2017 to 2017
$144k
NCI NIH HHS P30 CA016058NIGMS NIH HHS P41 GM128577NIGMS NIH HHS R01 GM067807NIGMS NIH HHS R01 GM122432NIH HHS S10 OD023582
6 · The paper itself

Abstract

RNase P is a ribonucleoprotein (RNP) that catalyzes removal of the 5' leader from precursor tRNAs in all domains of life. A recent cryo-EM study of Methanocaldococcus jannaschii (Mja) RNase P produced a model at 4.6-Å resolution in a dimeric configuration, with each holoenzyme monomer containing one RNase P RNA (RPR) and one copy each of five RNase P proteins (RPPs; POP5, RPP30, RPP21, RPP29, L7Ae). Here, we used native mass spectrometry (MS), mass photometry (MP), and biochemical experiments that (i) validate the oligomeric state of the Mja RNase P holoenzyme in vitro, (ii) find a different stoichiometry for each holoenzyme monomer with up to two copies of L7Ae, and (iii) assess whether both L7Ae copies are necessary for optimal cleavage activity. By mutating all kink-turns in the RPR, we made the discovery that abolishing the canonical L7Ae-RPR interactions was not detrimental for RNase P assembly and function due to the redundancy provided by protein-protein interactions between L7Ae and other RPPs. Our results provide new insights into the architecture and evolution of RNase P, and highlight the utility of native MS and MP in integrated structural biology approaches that seek to augment the information obtained from low/medium-resolution cryo-EM models.

Indexed as

Archaeal ProteinsMethanocaldococcusRibonuclease PProtein ConformationRNA, TransferStructure-Activity RelationshipArchaeal ProteinsRibonuclease PRNA, Transfer

Identifiers

PMID35848927
PMCPMC9371926
OpenAlexW4285733081

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.