Evidence map›Paper›PMID 35848328›Full record

ArticleAnalytical chemistry2022

Solvent Precipitation SP3 (SP4) Enhances Recovery for Proteomics Sample Preparation without Magnetic Beads.

Harvey E Johnston, Kranthikumar Yadav, Joanna M Kirkpatrick, George S Biggs, David Oxley, Holger B Kramer, Rahul S Samant

Open access · hybridAbstract read
In one paragraph

Article in Analytical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 104 citations in OpenAlex.

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  13. ORMDL Proteins Turnover via Proteasome and Autophagy Is Cell-Type Dependent and Tied to Ceramide Homeostasis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Harvey E JohnstonSignalling Programme, The Babraham Institute, Cambridge CB22 3AT, United Kingdom.ORCID 0000-0001-7032-0227
Kranthikumar YadavMass Spectrometry Facility, The Babraham Institute, Cambridge CB22 3AT, United Kingdom.
Joanna M KirkpatrickProteomics STP, The Francis Crick Institute, London NW1 1AT, United Kingdom.ORCID 0000-0001-9291-7294
George S BiggsProteomics STP, The Francis Crick Institute, London NW1 1AT, United Kingdom.
David OxleyMass Spectrometry Facility, The Babraham Institute, Cambridge CB22 3AT, United Kingdom.
Holger B KramerMedical Research Council London Institute of Medical Sciences, Imperial College London, Hammersmith Hospital, London W12 0NN, United Kingdom.
Rahul S SamantSignalling Programme, The Babraham Institute, Cambridge CB22 3AT, United Kingdom.
Babraham Institute · GBGlaxoSmithKline (United Kingdom) · GBHammersmith Hospital · GBThe Francis Crick Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P013384/1
6 · The paper itself

Abstract

Complete, reproducible extraction of protein material is essential for comprehensive and unbiased proteome analyses. A current gold standard is single-pot, solid-phase-enhanced sample preparation (SP3), in which organic solvent and magnetic beads are used to denature and capture protein aggregates, with subsequent washes removing contaminants. However, SP3 is dependent on effective protein immobilization onto beads, risks losses during wash steps, and exhibits losses and greater costs at higher protein inputs. Here, we propose solvent precipitation SP3 (SP4) as an alternative to SP3 protein cleanup, capturing acetonitrile-induced protein aggregates by brief centrifugation rather than magnetism─with optional low-cost inert glass beads to simplify handling. SP4 recovered equivalent or greater protein yields for 1-5000 μg preparations and improved reproducibility (median protein

Indexed as

ProteomeProteomicsMagnetic PhenomenaProtein AggregatesReproducibility of ResultsSolventsProtein AggregatesProteomeSolvents

Identifiers

PMID35848328
PMCPMC9330274
OpenAlexW4285730867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.