Evidence map›Paper›PMID 35847767›Full record

ArticleBig data and cognitive computing2022

CompositeView: A Network-Based Visualization Tool.

Stephen A Allegri, Kevin McCoy, Cassie S Mitchell

Abstract read
In one paragraph

Article in Big data and cognitive computing, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Stephen A AllegriLaboratory for Pathology Dynamics, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.
Kevin McCoyLaboratory for Pathology Dynamics, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.ORCID 0000-0002-3570-6826
Cassie S MitchellLaboratory for Pathology Dynamics, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.

Funding

Regulatory and Human Study Operations (RHSO) Core CU19AG065169 · NIA · UNIVERSITY OF ARIZONA · PI BARNES, CAROL A. · 2021 to 2025
$59.8M
The Goizueta Alzheimer's Disease Research CenterP30AG066511 · NIA · EMORY UNIVERSITY · PI Amy D Rodriguez · 2020 to 2026
$29.0M
The Emory Alzheimer's Disease CenterP50AG025688 · NIA · EMORY UNIVERSITY · PI WALKER, LARY C · 2005 to 2019
$25.7M
Inflamm-aging of osteoprogenitor cells: A therapeutic target for improved bone healing - Resubmission - 1 - Revision - 3R01AG056169 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LEUCHT, PHILIPP · 2018 to 2022
$2.4M
A Big Data Approach to BCR ABL LeukemiasR21CA232249 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI MITCHELL, CASSIE S · 2019 to 2020
$358k
Inflamm-aging of osteoprogenitor cells: A therapeutic target for improved bone healingR56AG056169 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LEUCHT, PHILIPP · 2023 to 2023
$347k
NCI NIH HHS R21 CA232249NIA NIH HHS P30 AG066511NIA NIH HHS P50 AG025688NIA NIH HHS R01 AG056169NIA NIH HHS R56 AG056169NIA NIH HHS U19 AG065169
6 · The paper itself

Abstract

Large networks are quintessential to bioinformatics, knowledge graphs, social network analysis, and graph-based learning. CompositeView is a Python-based open-source application that improves interactive complex network visualization and extraction of actionable insight. CompositeView utilizes specifically formatted input data to calculate composite scores and display them using the Cytoscape component of Dash. Composite scores are defined representations of smaller sets of conceptually similar data that, when combined, generate a single score to reduce information overload. Visualized interactive results are user-refined via filtering elements such as node value and edge weight sliders and graph manipulation options (e.g., node color and layout spread). The primary difference between CompositeView and other network visualization tools is its ability to auto-calculate and auto-update composite scores as the user interactively filters or aggregates data. CompositeView was developed to visualize network relevance rankings, but it performs well with non-network data. Three disparate CompositeView use cases are shown: relevance rankings from SemNet 2.0, an open-source knowledge graph relationship ranking software for biomedical literature-based discovery; Human Development Index (HDI) data; and the Framingham cardiovascular study. CompositeView was stress tested to construct reference benchmarks that define breadth and size of data effectively visualized. Finally, CompositeView is compared to Excel, Tableau, Cytoscape, neo4j, NodeXL, and Gephi.

Indexed as

biomedical knowledge graphCompositeViewconcept relatednessHeteSimlink predictionnetwork analysisSemNet

Identifiers

PMID35847767
PMCPMC9281616

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.