Evidence map›Paper›PMID 35842547›Full record

ArticleExtremophiles : life under extreme conditions2022

Genomic analysis of heavy metal-resistant Halobacterium salinarum isolated from Sfax solar saltern sediments.

Houda Baati, Mariem Siala, Chafai Azri, Emna Ammar, Christopher Dunlap, Mohamed Trigui

Open access · bronzeAbstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Houda BaatiResearch Laboratory of Environmental Sciences and Sustainable Development "LASED" LR18ES32, University of Sfax, Sfax, Tunisia. houda_baati@yahoo.fr.
Mariem SialaResearch Laboratory of Environmental Sciences and Sustainable Development "LASED" LR18ES32, University of Sfax, Sfax, Tunisia.
Chafai AzriResearch Laboratory of Environmental Sciences and Sustainable Development "LASED" LR18ES32, University of Sfax, Sfax, Tunisia.
Emna AmmarResearch Laboratory of Environmental Sciences and Sustainable Development "LASED" LR18ES32, University of Sfax, Sfax, Tunisia.
Christopher DunlapUnited States Department of Agriculture, National Center for Agricultural Utilization Research, Crop Bioprotection Research Unit, 1815 North University St, Peoria, IL, 61604, USA.
Mohamed TriguiResearch Laboratory of Environmental Sciences and Sustainable Development "LASED" LR18ES32, University of Sfax, Sfax, Tunisia.
University of Sfax · TNUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The draft genome sequences of five archaeal strains, isolated from Sfax solar saltern sediments and affiliated with Halobacterium salinarum, were analyzed in order to reveal their adaptive strategies to live in hypersaline environments polluted with heavy metals. The genomes of the strains (named AS1, AS2, AS8, AS11, and AS19) are found to contain 2,060,688; 2,467,461; 2,236,624; 2,432,692; and 2,428,727 bp respectively, with a G + C content of 65.5, 66.0, 67.0, and 66.2%. The majority of these genes (43.69-55.65%) are annotated as hypothetical proteins. Growth under osmotic stress is possible by genes coding for potassium uptake, sodium efflux, and kinases, as well as stress proteins, DNA repair systems, and proteasomal components. These strains harbor many genes responsible for metal transport/resistance, such as: copper-translocating P-type ATPases, ABC transporter, and cobalt-zinc-cadmium resistance protein. In addition, detoxification enzymes and secondary metabolites are also identified. The results show strain AS1, as compared to the other strains, is more adapted to heavy metals and may be used in the bioremediation of multi-metal contaminated environments. This study highlights the presence of several commercially valuable bioproducts (carotenoids, retinal proteins, exopolysaccharide, stress proteins, squalene, and siderophores) and enzymes (protease, sulfatase, phosphatase, phosphoesterase, and chitinase) that can be used in many industrial applications.

Indexed as

Halobacterium salinarumMetals, HeavyBiodegradation, EnvironmentalGenomicsHeat-Shock ProteinsHeat-Shock ProteinsMetals, HeavyArchaeaGenome sequenceHeavy metalOsmotic stressSolar saltern

Identifiers

PMID35842547
PMCPMC9288257
OpenAlexW4285677666

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.