Evidence map›Paper›PMID 35840978›Full record

ArticleRespiratory research2022

The DDR-related gene signature with cell cycle checkpoint function predicts prognosis, immune activity, and chemoradiotherapy response in lung adenocarcinoma.

Quan Li, Pan Zhang, Huixiao Hu, Hang Huang, Dong Pan, Guangyun Mao, Burong Hu

Open access · goldAbstract read
In one paragraph

Article in Respiratory research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Quan LiDepartment of Radiation Medicine, School of Public Health and Management, Wenzhou Medical University, Wenzhou, 325035, China.
Pan ZhangDepartment of Radiation Medicine, School of Public Health and Management, Wenzhou Medical University, Wenzhou, 325035, China.
Huixiao HuDepartment of Radiation Medicine, School of Public Health and Management, Wenzhou Medical University, Wenzhou, 325035, China.
Hang HuangDepartment of Radiation Medicine, School of Public Health and Management, Wenzhou Medical University, Wenzhou, 325035, China.
Dong PanDepartment of Dermatology, Duke University Medical Center, Durham, NC, 27710, USA.
Guangyun MaoDepartment of Preventive Medicine, School of Public Health and Management, Wenzhou Medical University, Wenzhou, 325035, China.
Burong HuDepartment of Radiation Medicine, School of Public Health and Management, Wenzhou Medical University, Wenzhou, 325035, China. brhu@wmu.edu.cn.
Wenzhou Medical University · CNDuke Medical Center · US

Funding

National Natural Science Foundation of China 11635013the Scientific Research Project of Wenzhou Medical University for Talent QTJ20010
6 · The paper itself

Abstract

backgroundAs a DNA surveillance mechanism, cell cycle checkpoint has recently been discovered to be closely associated with lung adenocarcinoma (LUAD) prognosis. It is also an essential link in the process of DNA damage repair (DDR) that confers resistance to radiotherapy. Whether genes that have both functions play a more crucial role in LUAD prognosis remains unclear.

methodsIn this study, DDR-related genes with cell cycle checkpoint function (DCGs) were selected to investigate their effects on the prognosis of LUAD. The TCGA-LUAD cohort and two GEO external validation cohorts (GSE31210 and GSE42171) were performed to construct a prognosis model based on the least absolute shrinkage and selection operator (LASSO) regression. Patients were divided into high-risk and low-risk groups based on the model. Subsequently, the multivariate COX regression was used to construct a prognostic nomogram. The ssGSEA, CIBERSORT algorithm, TIMER tool, CMap database, and IC50 of chemotherapeutic agents were used to analyze immune activity and responsiveness to chemoradiotherapy.

results4 DCGs were selected as prognostic signatures, and patients in the high-risk group had a lower overall survival (OS). The lower infiltration levels of immune cells and the higher expression levels of immune checkpoints appeared in the high-risk group. The damage repair pathways were upregulated, and chemotherapeutic agent sensitivity was poor in the high-risk group.

conclusionsThe 4-DCGs signature prognosis model we constructed could predict the survival rate, immune activity, and chemoradiotherapy responsiveness of LUAD patients.

Indexed as

Adenocarcinoma of LungLung NeoplasmsCell Cycle CheckpointsChemoradiotherapyGene Expression Regulation, NeoplasticHumansKaplan-Meier EstimatePrognosisCancer prognosisCell cycle checkpointDNA damage repairGene signatureLung adenocarcinoma

Identifiers

PMID35840978
PMCPMC9288070
OpenAlexW4285491387

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.