Evidence map›Paper›PMID 35840120›Full record

ArticleNeurobiology of disease2022

Astrocytic GABA transporter 1 deficit in novel SLC6A1 variants mediated epilepsy: Connected from protein destabilization to seizures in mice and humans.

Felicia Mermer, Sarah Poliquin, Shuizhen Zhou, Xiaodong Wang, Yifeng Ding, Fei Yin, Wangzhen Shen, Juexin Wang, Kathryn Rigsby, Dong Xu and 5 more

Open access · goldAbstract read
In one paragraph

Article in Neurobiology of disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Gene therapies alleviate absence epilepsy associated withbioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. A transporter's doom or destiny:Frontiers in molecular neuroscience · 2024
    Review
  15. γ-Aminobutyric acid transporter and GABABrain communications · 2024
    Article
  16. Article
  17. GABAInternational journal of molecular sciences · 2023
    Article
  18. Heterozygous GABAEpilepsia · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Felicia MermerDepartment of Neurology, Vanderbilt University Medical Center, USA.
Sarah PoliquinThe Neuroscience Program, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Shuizhen ZhouDepartment of Neurology, Children's Hospital, Fudan University, Shanghai, China.
Xiaodong WangCiphergene in Beijing, China.
Yifeng DingDepartment of Neurology, Children's Hospital, Fudan University, Shanghai, China.
Fei YinDepartment of Neurology, Xiangya Hospital of The Central-Southern University in Changsha, China.
Wangzhen ShenDepartment of Neurology, Vanderbilt University Medical Center, USA.
Juexin WangDepartment of Electrical Engineering & Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.
Kathryn RigsbyThe Neuroscience Program, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Dong XuDepartment of Electrical Engineering & Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.
Taralynn MackThe Neuroscience Program, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Gerald NwosuThe Neuroscience Program, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Vanderbilt University-Meharry Medical College Alliance, Nashville, TN, 37232, USA.
Carson FlammThe Neuroscience Program, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Matthew SteinThe Neuroscience Program, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Jing-Qiong KangDepartment of Neurology, Vanderbilt University Medical Center, USA; Department of Pharmacology, Vanderbilt University, USA; Vanderbilt Kennedy Center of Human Development, University Medical Center, Nashville, TN, 37232, USA. Electronic address: Jingqiong.kang@vumc.org.
Vanderbilt University Medical Center · USChildren's Hospital of Fudan University · CNUniversity of Missouri · USCentral South University · CNCipher Gene (China) · CNVanderbilt University · US

Funding

Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey L Neul · 2020 to 2026
$10.3M
Multi-view self-supervised deep learning for biological sequences and beyondR35GM126985 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI DONG XU · 2018 to 2026
$3.8M
Promoting Protein Trafficking with 4-phenylbutyrate to Treat Genetic EpilepsyR01NS121718 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jing-Qiong Kang · 2022 to 2026
$2.2M
Altered synapse formation and function in a novel Dravet syndrome mouse modelR01NS082635 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KANG, JING-QIONG · 2013 to 2017
$1.7M
NICHD NIH HHS P50 HD103537NIGMS NIH HHS R35 GM126985NINDS NIH HHS R01 NS082635NINDS NIH HHS R01 NS121718
6 · The paper itself

Abstract

objectiveMutations in γ-aminobutyric acid (GABA) transporter 1 (GAT-1)-encoding SLC6A1 have been associated with myoclonic atonic epilepsy and other phenotypes. We determined the patho-mechanisms of the mutant GAT-1, in order to identify treatment targets.

methodsWe conducted whole-exome sequencing of patients with myoclonic atonic epilepsy (MAE) and characterized the seizure phenotypes and EEG patterns. We studied the protein stability and structural changes with homology modeling and machine learning tools. We characterized the function and trafficking of the mutant GAT-1 with

resultsWe identified four novel SLC6A1 variants associated with MAE and 2 to 4 Hz spike-wave discharges as a common EEG feature. Machine learning tools predicted that the variant proteins are destabilized. The variant protein had reduced expression and reduced GABA uptake due to endoplasmic reticular retention. The consistent observation was made in cortical and thalamic astrocytes from variant-knockin mice and human iPSC-derived astrocytes. The Slc6a

interpretationSLC6A1 variants in various locations of the protein peptides can cause MAE with similar seizure phenotypes and EEG features. Reduced GABA uptake is due to decreased functional GAT-1, which, in thalamic astrocytes, could result in increased extracellular GABA accumulation and enhanced tonic inhibition, leading to seizures and abnormal EEGs.

Indexed as

Epilepsies, MyoclonicEpilepsy, AbsenceAnimalsAstrocytesGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidHumansMiceSeizuresGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidSLC6A1 protein, humanAstrocytesEndoplasmic reticulum (ER)GABA transporter 1 (GAT-1)Myoclonic atonic epilepsy (MAE)Protein misfoldingSLC6A1Thalamus

Identifiers

PMID35840120
PMCPMC9472560
OpenAlexW4285400645

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.