Evidence map›Paper›PMID 35838886›Full record

ArticleApplied biochemistry and biotechnology2022

Interaction of Bioactive Compounds of Moringa oleifera Leaves with SARS-CoV-2 Proteins to Combat COVID-19 Pathogenesis: a Phytochemical and In Silico Analysis.

Sahabjada Siddiqui, Shivbrat Upadhyay, Rumana Ahmad, Md Abul Barkat, Azfar Jamal, Abdulaziz S Alothaim, Mohd Zaheen Hassan, Mohammad Akhlaquer Rahman, Md Arshad, Tanveer Ahamad and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied biochemistry and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Sahabjada SiddiquiDepartment of Biotechnology, Era's Lucknow Medical College & Hospital, Era University, Lucknow, 226003, India. sahabjadabiotech04@gmail.com.ORCID http://orcid.org/0000-0003-0982-1465
Shivbrat UpadhyayDepartment of Biotechnology, Era's Lucknow Medical College & Hospital, Era University, Lucknow, 226003, India.
Rumana AhmadDepartment of Biochemistry, Era's Lucknow Medical College and Hospital, Era University, Lucknow, India.
Md Abul BarkatDepartment of Pharmaceutics, College of Pharmacy, University of Hafr Al-Batin, Al Jamiah, Hafr Al Batin, 39524, Saudi Arabia.
Azfar JamalHealth and Basic Science Research Centre, Majmaah University, Majmaah, 11952, Saudi Arabia.
Abdulaziz S AlothaimDepartment of Biology, College of Science, Al-Zulfi, Majmaah University, Majmaah, 11952, Riyadh Region, Saudi Arabia.
Mohd Zaheen HassanDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Khalid University, Abha, Saudi Arabia.
Mohammad Akhlaquer RahmanDepartment of Pharmaceutics and Industrial Pharmacy, College of Pharmacy, Taif University, Taif, 21944, Saudi Arabia.
Md ArshadDepartment of Zoology, Aligarh Muslim University, Aligarh, India.
Tanveer AhamadDepartment of Biotechnology, Era's Lucknow Medical College & Hospital, Era University, Lucknow, 226003, India.
Mohammad Faheem KhanDepartment of Biotechnology, Era's Lucknow Medical College & Hospital, Era University, Lucknow, 226003, India.
Hari ShankarResearch Cell, Era's Lucknow Medical College and Hospital, Lucknow, India.
M AliDepartment of Pharmacognosy, College of Pharmacy, Jazan University, Jazan, Saudi Arabia.
Sarjeel KaleemAvadh Institute of Medical Technologies & Hospital, Lucknow, India.
Jalal AhmadDepartment of Microbiology, Era's Lucknow Medical College and Hospital, Lucknow, India.
Era's Lucknow Medical College and Hospital · INMajmaah University · SAAligarh Muslim University · INJazan University · SAKing Khalid University · SATaif University · SAUniversity of Hafr Al-Batin · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Novel SARS-CoV-2 claimed a large number of human lives. The main proteins for viral entry into host cells are SARS-CoV-2 spike glycoprotein (PDB ID: 6VYB) and spike receptor-binding domain bound with ACE2 (spike RBD-ACE2; PDB ID: 6M0J). Currently, specific therapies are lacking globally. This study was designed to investigate the bioactive components from Moringa oleifera leaf (MOL) extract by gas chromatography-mass spectroscopy (GC-MS) and their binding interactions with spike glycoprotein and spike RBD-ACE2 protein through computational analysis. GC-MS-based analysis unveiled the presence of thirty-seven bioactive components in MOL extract, viz. polyphenols, fatty acids, terpenes/triterpenes, phytosterols/steroids, and aliphatic hydrocarbons. These bioactive phytoconstituents showed potential binding with SARS-CoV-2 spike glycoprotein and spike RBD-ACE2 protein through the AutoDock 4.2 tool. Further by using AutoDock 4.2 and AutoDock Vina, the top sixteen hits (binding energy ≥  - 6.0 kcal/mol) were selected, and these might be considered as active biomolecules. Moreover, molecular dynamics simulation was determined by the Desmond module. Interestingly two biomolecules, namely β-tocopherol with spike glycoprotein and β-sitosterol with spike RBD-ACE2, displayed the best interacting complexes and low deviations during 100-ns simulation, implying their strong stability and compactness. Remarkably, both β-tocopherol and β-sitosterol also showed the drug- likeness with no predicted toxicity. In conclusion, these findings suggested that both compounds β-tocopherol and β-sitosterol may be developed as anti-SARS-CoV-2 drugs. The current findings of in silico approach need to be optimized using in vitro and clinical studies to prove the effectiveness of phytomolecules against SARS-CoV-2.

Indexed as

COVID-19 Drug TreatmentMoringa oleiferaAngiotensin-Converting Enzyme 2beta-TocopherolHumansMolecular Dynamics SimulationPhytochemicalsPlant ExtractsPlant LeavesProtein BindingSARS-CoV-2Angiotensin-Converting Enzyme 2beta-TocopherolPhytochemicalsPlant ExtractsGC–MS analysisMolecular dockingMoringa oleifera leafPhytoconstituentsSARS-CoV-2

Identifiers

PMID35838886
PMCPMC9283843
OpenAlexW4285594016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.