Evidence map›Paper›PMID 35836997›Full record

ArticleJournal of biomolecular techniques : JBT2022

The Shared Core Resource as a Partner in Innovative Scientific Research: Illustration from an Academic Microscopy Imaging Center.

Douglas J Taatjes, Prachi N Ghule, Nicole A Bouffard, Kyra Lee, Nicole M DeLance, Mark F Evans, Donald L Weaver, Nicholas Deakin, Frances E Carr, Brian L Sprague and 2 more

Abstract read
In one paragraph

Article in Journal of biomolecular techniques : JBT, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Douglas J TaatjesDepartment of Pathology and Laboratory Medicine, Microscopy Imaging Center, and University of Vermont Cancer Center, University of Vermont Burlington, VT 05405 USA.
Prachi N GhuleUniversity of Vermont Cancer Center and Department of Biochemistry, University of Vermont Burlington, VT 05405 USA.
Nicole A BouffardDepartment of Pathology and Laboratory Medicine and Microscopy Imaging Center, University of Vermont Burlington, VT 05405 USA.
Kyra LeeDepartment of Biochemistry, University of Vermont Burlington, VT 05405 USA.
Nicole M DeLanceDepartment of Pathology and Laboratory Medicine and Microscopy Imaging Center, University of Vermont Burlington, VT 05405 USA.
Mark F EvansDepartment of Pathology and Laboratory Medicine and University of Vermont Cancer Center, University of Vermont Burlington, VT 05405 USA.
Donald L WeaverDepartment of Pathology and Laboratory Medicine and University of Vermont Cancer Center, University of Vermont Burlington, VT 05405 USA.
Nicholas DeakinNikon Instruments Inc. Melville, NY USA.
Frances E CarrUniversity of Vermont Cancer Center and Department of Pharmacology, University of Vermont Burlington, VT 05405 USA.
Brian L SpragueUniversity of Vermont Cancer Center and Department of Surgery, Larner College of Medicine, University of Vermont Burlington, VT 05405 USA.
Gary S SteinUniversity of Vermont Cancer Center and Department of Biochemistry, University of Vermont Burlington, VT 05405 USA.
Janet L SteinUniversity of Vermont Cancer Center and Department of Biochemistry, University of Vermont Burlington, VT 05405 USA.

Funding

Understanding Factors Influencing COVID-19 Testing and Vaccination in Immigrant Low-income and Homeless Populations and Testing Targeted InterventionsU54GM115516 · NIGMS · MAINEHEALTH · PI Brenda Morissette Joly · 2017 to 2026
$51.6M
Vermont Screening Process Documentation UnitU54CA163303 · NCI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI SPRAGUE, BRIAN L · 2011 to 2017
$6.4M
Vermont Breast Cancer Molecular Characterization LaboratoryU01CA196383 · NCI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI SPRAGUE, BRIAN L, STEIN, JANET L · 2015 to 2020
$5.4M
Nikon A1R-ER Confocal Microscope for the Microscopy Imaging CenterS10OD025030 · OD · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TAATJES, DOUGLAS J. · 2018 to 2018
$557k
NCI NIH HHS U01 CA196383NCI NIH HHS U54 CA163303NIGMS NIH HHS U54 GM115516NIH HHS S10 OD025030
6 · The paper itself

Abstract

Core facilities have a ubiquitous and increasingly valuable presence at research institutions. Although many shared cores were originally created to provide routine services and access to complex and expensive instrumentation for the research community, they are frequently called upon by investigators to design protocols and procedures to help answer complex research questions. For instance, shared microscopy resources are evolving from providing access to and training on complex imaging instruments to developing detailed innovative protocols and experimental strategies, including sample preparation techniques, staining, complex imaging parameters, and high-level image analyses. These approaches require close intellectual collaboration between core staff and research investigators to formulate and coordinate plans for protocol development suited to the research question. Herein, we provide an example of such coordinated collaboration between a shared microscopy facility and a team of scientists and clinician-investigators to approach a complex multiprobe immunostaining, imaging, and image analysis project investigating the tumor microenvironment from human breast cancer samples. Our hope is that this example may be used to convey to institute administrators the critical importance of the intellectual contributions of the scientific staff in core facilities to research endeavors.

Indexed as

MicroscopyResearch PersonnelAcademies and InstitutesHealth FacilitiesHumansResearch Designbreast cancercell phenotypingconfocal microscopycore facilityimage analysisimmunohistochemistryspectral imagingstromal cells

Identifiers

PMID35836997
PMCPMC9258914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.