Evidence map›Paper›PMID 35834009›Full record

ArticleCellular and molecular life sciences : CMLS2022

Human cytosolic transaminases: side activities and patterns of discrimination towards physiologically available alternative substrates.

Francesco Caligiore, Erika Zangelmi, Carola Vetro, Takfarinas Kentache, Joseph P Dewulf, Maria Veiga-da-Cunha, Emile Van Schaftingen, Guido Bommer, Alessio Peracchi

Open access · hybridAbstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Francesco CaligioreDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium.
Erika ZangelmiDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124, Parma, Italy.
Carola VetroDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124, Parma, Italy.
Takfarinas KentacheDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium.
Joseph P DewulfDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium.
Maria Veiga-da-CunhaDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium.
Emile Van SchaftingenDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium.
Guido BommerDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium.
Alessio PeracchiDe Duve Institute and WELBIO, UCLouvain, Avenue Hippocrate 75, 1200, Brussels, Belgium. alessio.peracchi@unipr.it.ORCID http://orcid.org/0000-0003-3254-4099
de Duve Institute · BEUniversity of Parma · IT

Funding

H2020 European Research Council Consolidator Grant 771704 NoMePaCaUCLouvain ARC 17- 22-079
6 · The paper itself

Abstract

Transaminases play key roles in central metabolism, transferring the amino group from a donor substrate to an acceptor. These enzymes can often act, with low efficiency, on compounds different from the preferred substrates. To understand what might have shaped the substrate specificity of this class of enzymes, we examined the reactivity of six human cytosolic transaminases towards amino acids whose main degradative pathways do not include any transamination. We also tested whether sugars and sugar phosphates could serve as alternative amino group acceptors for these cytosolic enzymes. Each of the six aminotransferases reacted appreciably with at least three of the alternative amino acid substrates in vitro, albeit at usually feeble rates. Reactions with L-Thr, L-Arg, L-Lys and L-Asn were consistently very slow-a bias explained in part by the structural differences between these amino acids and the preferred substrates of the transaminases. On the other hand, L-His and L-Trp reacted more efficiently, particularly with GTK (glutamine transaminase K; also known as KYAT1). This points towards a role of GTK in the salvage of L-Trp (in cooperation with ω-amidase and possibly with the cytosolic malate dehydrogenase, MDH1, which efficiently reduced the product of L-Trp transamination). Finally, the transaminases were extremely ineffective at utilizing sugars and sugar derivatives, with the exception of the glycolytic intermediate dihydroxyacetone phosphate, which was slowly but appreciably transaminated by some of the enzymes to yield serinol phosphate. Evidence for the formation of this compound in a human cell line was also obtained. We discuss the biological and evolutionary implications of our results.

Indexed as

Amino AcidsTransaminasesCytosolHumansKineticsSubstrate SpecificitySugarsAmino AcidsSugarsTransaminasesAminotransferasesCytosolic malate dehydrogenaseEnzyme compartmentalizationIndolepyruvateSide reactions

Identifiers

PMID35834009
PMCPMC9283133
OpenAlexW4285388428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.