Evidence map›Paper›PMID 35831952›Full record

ArticleDevelopment (Cambridge, England)2022

Integrated analysis of Wnt signalling system component gene expression.

Paula Murphy, Chris Armit, Bill Hill, Shanmugasundaram Venkataraman, Patrick Frankel, Richard A Baldock, Duncan R Davidson

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  6. Effects ofGenes · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Paula MurphySchool of Natural Sciences, Department of Zoology, Trinity College Dublin, The University of Dublin, Dublin 2, Ireland.ORCID 0000-0002-8048-6850
Chris ArmitMRC Human Genetics Unit, Institute of Cancer and Genetics, University of Edinburgh, Crewe Road, Edinburgh EH4 2XU, UK.ORCID 0000-0002-9952-8141
Bill HillMRC Human Genetics Unit, Institute of Cancer and Genetics, University of Edinburgh, Crewe Road, Edinburgh EH4 2XU, UK.ORCID 0000-0002-8988-0627
Shanmugasundaram VenkataramanMRC Human Genetics Unit, Institute of Cancer and Genetics, University of Edinburgh, Crewe Road, Edinburgh EH4 2XU, UK.ORCID 0000-0002-3200-2698
Patrick FrankelSchool of Natural Sciences, Department of Zoology, Trinity College Dublin, The University of Dublin, Dublin 2, Ireland.
Richard A BaldockMRC Human Genetics Unit, Institute of Cancer and Genetics, University of Edinburgh, Crewe Road, Edinburgh EH4 2XU, UK.ORCID 0000-0003-0332-6877
Duncan R DavidsonMRC Human Genetics Unit, Institute of Cancer and Genetics, University of Edinburgh, Crewe Road, Edinburgh EH4 2XU, UK.
Institute of Genetics and Cancer · GBTrinity College Dublin · IE

Funding

Medical Research Council U.1275.2.4.4.1
6 · The paper itself

Abstract

Wnt signalling controls patterning and differentiation across many tissues and organs of the developing embryo through temporally and spatially restricted expression of multi-gene families encoding ligands, receptors, pathway modulators and intracellular components. Here, we report an integrated analysis of key genes in the 3D space of the mouse embryo across multiple stages of development. We applied a method for 3D/3D image transformation to map all gene expression patterns to a single reference embryo for each stage, providing both visual analysis and volumetric mapping allowing computational methods to interrogate the combined expression patterns. We identify territories where multiple Wnt and Fzd genes are co-expressed and cross-compare all patterns, including all seven Wnt paralogous gene pairs. The comprehensive analysis revealed regions in the embryo where no Wnt or Fzd gene expression is detected, and where single Wnt genes are uniquely expressed. This work provides insight into a previously unappreciated level of organisation of expression patterns, as well as presenting a resource that can be utilised further by the research community for whole-system analysis.

Indexed as

Wnt ProteinsWnt Signaling PathwayAnimalsEmbryo, MammalianGene ExpressionGene Expression Regulation, DevelopmentalMiceWnt Proteins3D imagingComputational analysisIntegrated analysisWnt signalling

Identifiers

PMID35831952
PMCPMC9481969
OpenAlexW4285390306

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.