Evidence map›Paper›PMID 35831384›Full record

ArticleScientific reports2022

CRISPR Del/Rei: a simple, flexible, and efficient pipeline for scarless genome editing.

Kyra L Feuer, Marah H Wahbeh, Christian Yovo, Eman Rabie, Anh-Thu N Lam, Sara Abdollahi, Lindsay J Young, Bailey Rike, Akul Umamageswaran, Dimitrios Avramopoulos

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. A Functional Schizophrenia-associated genetic variant near thebioRxiv : the preprint server for biology · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Kyra L Feuer *McKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Marah H Wahbeh *McKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Christian YovoMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Eman RabieMedical Molecular Genetics Department, Human Genetics and Genome Research Division, National Research Centre, Cairo, Egypt.
Anh-Thu N LamMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Sara AbdollahiMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Lindsay J YoungMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Bailey RikeMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Akul UmamageswaranMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA.
Dimitrios AvramopoulosMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, USA. adimitr1@jhmi.edu.
Johns Hopkins University · USJohns Hopkins Medicine · USNational Research Centre · EG

Funding

Project 3P50MH094268 · NIMH · JOHNS HOPKINS UNIVERSITY · PI SAWA, AKIRA · 2011 to 2020
$19.9M
SZ-associated loci: Functional consequences and treatment opportunitiesR01MH113215 · NIMH · JOHNS HOPKINS UNIVERSITY · PI AVRAMOPOULOS, DIMITRIOS · 2018 to 2021
$3.8M
Understanding GWAS signals: functional variants or functional haplotypes?R21MH122936 · NIMH · JOHNS HOPKINS UNIVERSITY · PI AVRAMOPOULOS, DIMITRIOS · 2020 to 2020
$450k
NIMH NIH HHS MH122936NIMH NIH HHS P50 MH094268NIMH NIH HHS R01 MH113215NIMH NIH HHS R21 MH122936
6 · The paper itself

Abstract

Scarless genome editing of induced pluripotent stem cells (iPSCs) is crucial for the precise modeling of genetic disease. Here we present CRISPR Del/Rei, a two-step deletion-reinsertion strategy with high editing efficiency and simple PCR-based screening that generates isogenic clones in ~ 2 months. We apply our strategy to edit iPSCs at 3 loci with only rare off target editing.

Indexed as

Gene EditingInduced Pluripotent Stem CellsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsGenome, HumanHumans

Identifiers

PMID35831384
PMCPMC9279498
OpenAlexW4285086646

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.