Evidence map›Paper›PMID 35830855›Full record

ArticleMolecular cell2022

Transcript-specific determinants of pre-mRNA splicing revealed through in vivo kinetic analyses of the 1

Michael A Gildea, Zachary W Dwyer, Jeffrey A Pleiss

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
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  4. Co-transcriptional gene regulation in eukaryotes and prokaryotes.Nature reviews. Molecular cell biology · 2024
    Review
  5. Article
  6. Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michael A GildeaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Zachary W DwyerDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Jeffrey A PleissDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA. Electronic address: jpleiss@cornell.edu.
Cornell University · US

Funding

Mechanisms of environmentally responsive splicing in S.PombeR01GM098634 · NIGMS · CORNELL UNIVERSITY · PI PLEISS, JEFFREY A · 2011 to 2020
$2.9M
Revealing molecular determinants of transcript-specific regulation in pre-mRNA splicing via rapid in vivo kinetic rate measurementsR01GM140082 · NIGMS · CORNELL UNIVERSITY · PI PLEISS, JEFFREY A · 2021 to 2024
$1.3M
NIGMS NIH HHS R01 GM098634NIGMS NIH HHS R01 GM140082
6 · The paper itself

Abstract

We generate high-precision measurements of the in vivo rates of both chemical steps of pre-mRNA splicing across the genome-wide complement of substrates in yeast by coupling metabolic labeling, multiplexed primer-extension sequencing, and kinetic modeling. We demonstrate that the rates of intron removal vary widely, splice-site sequences are primary determinants of 1

Indexed as

RNA PrecursorsRNA SplicingIntronsKineticsSaccharomyces cerevisiaeRNA Precursors4-thiouracilco-transcriptional splicingin vivo kineticsmultiplexed primer-extension sequencingpre-mRNA splicingRNA processingRNA-seq

Identifiers

PMID35830855
PMCPMC9391291
OpenAlexW4285098021

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.