Evidence map›Paper›PMID 35822435›Full record

ArticleThe plant genome2022

Genetic mapping of sorghum resistance to an Illinois isolate of Colletotrichum sublineola.

Ashmita Khanal, Pragya Adhikari, Christopher Kaiser, Alexander E Lipka, Tiffany M Jamann, Santiago X Mideros

Open access · goldAbstract read
In one paragraph

Article in The plant genome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 60% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ashmita KhanalDep. of Crop Sciences, Univ. of Illinois at Urbana-Champaign, Urbana, IL, 61802, USA.
Pragya AdhikariDep. of Crop Sciences, Univ. of Illinois at Urbana-Champaign, Urbana, IL, 61802, USA.
Christopher KaiserDep. of Crop Sciences, Univ. of Illinois at Urbana-Champaign, Urbana, IL, 61802, USA.
Alexander E LipkaDep. of Crop Sciences, Univ. of Illinois at Urbana-Champaign, Urbana, IL, 61802, USA.ORCID 0000-0003-1571-8528
Tiffany M JamannDep. of Crop Sciences, Univ. of Illinois at Urbana-Champaign, Urbana, IL, 61802, USA.ORCID 0000-0002-7288-0866
Santiago X MiderosDep. of Crop Sciences, Univ. of Illinois at Urbana-Champaign, Urbana, IL, 61802, USA.ORCID 0000-0002-8988-2964
University of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anthracnose leaf blight (ALB) is an economically important disease of sorghum [Sorghum bicolor (L.) Moench] caused by the fungal pathogen Colletotrichum sublineola Henn. ex Sacc. & Trotter. Although qualitative and quantitative resistance have been identified for ALB, the usefulness of resistance loci differs depending on the pathogen pathotype. Identifying resistance effective against unique pathogen pathotypes is critical to managing ALB, as the disease is managed primarily through the deployment of host resistance. We isolated C. sublineola from ALB-infected leaves collected in Illinois and found that the strain was a novel pathotype, as it produced a unique combination of virulence against a set of differential lines. Using this isolate, we inoculated 579 temperate-adapted sorghum conversion lines in 2019 and 2020. We then conducted a genome-wide association study (GWAS) and a metabolic pathway analysis using the Pathway Associated Study Tool (PAST). We identified 47 significant markers distributed across all chromosomes except chromosome 8. We identified 32 candidate genes based on physical proximity with significant markers, some of which have a known role in host defense. We identified 47 pathways associated with ALB resistance, indicating a role for secondary metabolism in defense to ALB. Our results are important to improve the understanding of the genetic basis of ALB resistance in sorghum and highlight the importance of developing durable resistance to ALB.

Indexed as

ColletotrichumSorghumEdible GrainGenome-Wide Association StudyPlant Diseases

Identifiers

PMID35822435
PMCPMC12807178
OpenAlexW4285083688

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.