Evidence map›Paper›PMID 35821148›Full record

ArticleArchives of virology2022

Two new umbravirus-like associated RNAs (ulaRNAs) discovered in maize and johnsongrass from Ecuador.

Diego F Quito-Avila, Edison G Reyes-Proaño, Alma Mendoza, Paolo Margaria, Wulf Menzel, Sayanta Bera, Anne E Simon

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Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Diego F Quito-AvilaFacultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, ESPOL, Km 30.5 Vía Perimetral Campus Gustavo Galindo, Guayaquil, Ecuador. dquito@espol.edu.ec.ORCID http://orcid.org/0000-0002-6170-1113
Edison G Reyes-ProañoFacultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, ESPOL, Km 30.5 Vía Perimetral Campus Gustavo Galindo, Guayaquil, Ecuador.
Alma MendozaINIAP, Estación Experimental Portoviejo, Km 12, Via a Santa Ana, Manabí, Ecuador.
Paolo MargariaPlant Virus Department, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7 B, Braunschweig, Germany.
Wulf MenzelPlant Virus Department, Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7 B, Braunschweig, Germany.ORCID http://orcid.org/0000-0002-3614-161X
Sayanta BeraDepartment of Cell Biology and Molecular Genetics, University of Maryland College Park, College Park, MD, 20742, USA.
Anne E SimonDepartment of Cell Biology and Molecular Genetics, University of Maryland College Park, College Park, MD, 20742, USA.

Funding

HORIZON EUROPE Global Challenges and European Industrial Competitiveness 871029National Science Foundation EAGER 1912025
6 · The paper itself

Abstract

Two new umbravirus-like associated RNAs (ulaRNAs) were found, respectively, in maize and Johnsongrass samples from Ecuador. The complete sequences consist of 3,053 and 3,025 nucleotides, respectively, and contain four open reading frames (ORFs). Their genome sequences were 58% identical to each other and 28 to 60% identical to the most closely related viruses. Phylogenetic analysis using full genome sequences and amino acid sequence of the RNA-dependent-RNA polymerase (RdRp) placed both sequences in a clade sharing the most recent common ancestor with ulaRNAs from sugarcane and maize, suggesting that they belong to a monophyletic grass-infecting lineage. Their terminal regions exhibit features common to umbraviruses and ulaRNAs.

Indexed as

SorghumTombusviridaeEcuadorGenome, ViralOpen Reading FramesPhylogenyRNARNA, ViralZea maysRNARNA, Viral

Identifiers

PMID35821148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.