Evidence map›Paper›PMID 35820700›Full record

ArticleRNA (New York, N.Y.)2022

A single natural RNA modification can destabilize a U•A-T-rich RNA•DNA-DNA triple helix.

Charlotte N Kunkler, Grace E Schiefelbein, Nathan J O'Leary, Phillip J McCown, Jessica A Brown

Open access · hybridAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Charlotte N KunklerDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.ORCID http://orcid.org/0000-0001-9319-6652
Grace E SchiefelbeinDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.ORCID http://orcid.org/0000-0002-3830-3424
Nathan J O'LearyDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.
Phillip J McCownMichigan Medicine, Department of Internal Medicine, Division of Nephrology, University of Michigan, Ann Arbor, Michigan 48109, USA.ORCID http://orcid.org/0000-0002-8012-1931
Jessica A BrownDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA.ORCID http://orcid.org/0000-0001-9055-5939
University of Notre Dame · USUniversity of Michigan · US

Funding

Chemistry-Biochemistry-Biology Training Program at Notre DameT32GM075762 · NIGMS · UNIVERSITY OF NOTRE DAME · PI CHANG, MAYLAND F, MOBASHERY, SHAHRIAR · 2007 to 2021
$3.7M
Characterization of a Model System to Advance Triple-Stranded RNA BiologyR35GM133696 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BROWN, JESSICA ANN · 2019 to 2023
$1.9M
Elucidating the Inhibitory Mechanisms of RNA Triple Helices in Nuclear DecayR00GM111430 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BROWN, JESSICA ANN · 2016 to 2018
$743k
Understanding the Structural Properties of Triple Helices and a Triple-Stranded RNA-Binding ProteinF31GM136163 · NIGMS · UNIVERSITY OF NOTRE DAME · PI KUNKLER, CHARLOTTE NICOLE · 2020 to 2021
$84k
NIGMS NIH HHS F31 GM136163NIGMS NIH HHS R00 GM111430NIGMS NIH HHS R35 GM133696NIGMS NIH HHS T32 GM075762
6 · The paper itself

Abstract

Recent studies suggest noncoding RNAs interact with genomic DNA, forming RNA•DNA-DNA triple helices, as a mechanism to regulate transcription. One way cells could regulate the formation of these triple helices is through RNA modifications. With over 140 naturally occurring RNA modifications, we hypothesize that some modifications stabilize RNA•DNA-DNA triple helices while others destabilize them. Here, we focus on a pyrimidine-motif triple helix composed of canonical U•A-T and C•G-C base triples. We employed electrophoretic mobility shift assays and microscale thermophoresis to examine how 11 different RNA modifications at a single position in an RNA•DNA-DNA triple helix affect stability: 5-methylcytidine (m

Indexed as

DNARNA, Long NoncodingHumansNucleic Acid ConformationPseudouridineRNARNA, UntranslatedDNAPseudouridineRNARNA, Long NoncodingRNA, Untranslatedlong noncoding RNARNA modificationtriple helix

Identifiers

PMID35820700
PMCPMC9380742
OpenAlexW4285088665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.