Evidence map›Paper›PMID 35820415›Full record

ArticleDevelopmental cell2022

Distinct p53 isoforms code for opposing transcriptional outcomes.

Annika Wylie, Amanda E Jones, Simanti Das, Wan-Jin Lu, John M Abrams

Open access · greenAbstract read
In one paragraph

Article in Developmental cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  6. Quantitative Analysis of Isoform Switching in Cancer.International journal of molecular sciences · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Annika WylieDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Amanda E JonesDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Simanti DasDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Wan-Jin LuInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
John M AbramsDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address: john.abrams@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · USStanford University · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MELANIE H. COBB · 2010 to 2026
$53.7M
Cancer Biology Training GrantT32CA124334 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 2007 to 2021
$5.3M
Suppression of mobile elements by p53 genesR01GM115682 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ABRAMS, JOHN M · 2015 to 2024
$2.7M
Tumor suppression, p53 and retrotransposonsR01CA222579 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI ABRAMS, JOHN M · 2018 to 2022
$1.8M
NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA222579NCI NIH HHS T32 CA124334NIGMS NIH HHS R01 GM115682
6 · The paper itself

Abstract

p53 genes are conserved transcriptional activators that respond to stress. These proteins can also downregulate genes, but the mechanisms are not understood and are generally assumed to be indirect. Here, we investigate synthetic and native cis-regulatory elements in Drosophila to examine opposing features of p53-mediated transcriptional control in vivo. We show that transcriptional repression by p53 operates continuously through canonical DNA binding sites that confer p53-dependent transactivation at earlier developmental stages. p53 transrepression is correlated with local H3K9me3 chromatin marks and occurs without the need for stress or Chk2. In sufficiency tests, two p53 isoforms qualify as transrepressors and a third qualifies as a transcriptional activator. Targeted isoform-specific knockouts dissociate these opposing transcriptional activities, highlighting features that are dispensable for transactivation but critical for repression and for proper germ cell formation. Together, these results demonstrate that certain p53 isoforms function as constitutive tissue-specific repressors, raising important implications for tumor suppression by the human counterpart.

Indexed as

ChromatinTumor Suppressor Protein p53AnimalsBinding SitesDrosophilaHumansProtein IsoformsTranscriptional ActivationTranscription FactorsChromatinProtein IsoformsTranscription FactorsTumor Suppressor Protein p53biosensorChk2chromatin modificationscorollaDNA binding motifDrosophilap53p53 isoformstransactivationtransrepression

Identifiers

PMID35820415
PMCPMC9378576
OpenAlexW4285013998

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.