Evidence map›Paper›PMID 35820040›Full record

ArticleDatabase : the journal of biological databases and curation2022

HumanMine: advanced data searching, analysis and cross-species comparison.

Rachel Lyne, Adrián Bazaga, Daniela Butano, Sergio Contrino, Joshua Heimbach, Fengyuan Hu, Alexis Kalderimis, Mike Lyne, Kevin Reierskog, Radek Stepan and 4 more

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. ALife science alliance · 2025
    Article
  3. Biomolecules · 2025
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Rachel LyneDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.ORCID 0000-0001-8050-402X
Adrián BazagaDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Daniela ButanoDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Sergio ContrinoDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Joshua HeimbachDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Fengyuan HuDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Alexis KalderimisDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Mike LyneDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Kevin ReierskogDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Radek StepanDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Julie SullivanDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Archie WiseDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Yo YehudiDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.
Gos MicklemDepartment of Genetics, University of Cambridge, Downing Pl, Cambridge, CB2 3EH, UK.

Funding

Wellcome Trust 099133Wellcome Trust 208381
6 · The paper itself

Abstract

HumanMine (www.humanmine.org) is an integrated database of human genomics and proteomics data that provides a powerful interface to support sophisticated exploration and analysis of data compiled from experimental, computational and curated data sources. Built using the InterMine data integration platform, HumanMine includes genes, proteins, pathways, expression levels, Single nucleotide polymorphism (SNP), diseases and more, integrated into a single searchable database. HumanMine promotes integrative analysis, a powerful approach in modern biology that allows many sources of evidence to be analysed together. The data can be accessed through a user-friendly web interface as well as a powerful, scriptable web service Application programming interface (API) to allow programmatic access to data. The web interface includes a useful identifier resolution system, sophisticated query options and interactive results tables that enable powerful exploration of data, including data summaries, filtering, browsing and export. A set of graphical analysis tools provide a rich environment for data exploration including statistical enrichment of sets of genes or other biological entities. HumanMine can be used for integrative multistaged analysis that can lead to new insights and uncover previously unknown relationships. Database URL: https://www.humanmine.org.

Indexed as

Genome, HumanInformation Storage and RetrievalDatabases, FactualHumansProteomics

Identifiers

PMID35820040
PMCPMC9275753

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.