Evidence map›Paper›PMID 35819848›Full record

ArticleJournal of the American Chemical Society2022

Adaptor-Specific Antibody Fragment Inhibitors for the Intracellular Modulation of p97 (VCP) Protein-Protein Interactions.

Ziwen Jiang, Yu-Hsuan Kuo, Mengqi Zhong, Jianchao Zhang, Xin X Zhou, Lijuan Xing, James A Wells, Yanzhuang Wang, Michelle R Arkin

Open access · hybridAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Development of a NanoBRET assay for evaluation of 14-3-3σ molecular glues.SLAS discovery : advancing life sciences R & D · 2024
    Article
  2. Article
  3. Golgi defect as a major contributor to lysosomal dysfunction.Frontiers in cell and developmental biology · 2024
    Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ziwen JiangDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158, United States.ORCID 0000-0002-6633-7824
Yu-Hsuan KuoDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158, United States.
Mengqi ZhongDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158, United States.ORCID 0000-0003-0525-6999
Jianchao ZhangDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109-1085, United States.ORCID 0000-0002-3269-4639
Xin X ZhouDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158, United States.ORCID 0000-0002-8198-2856
Lijuan XingDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109-1085, United States.
James A WellsDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158, United States.ORCID 0000-0001-8267-5519
Yanzhuang WangDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109-1085, United States.
Michelle R ArkinDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158, United States.ORCID 0000-0002-9366-6770
University of California, San Francisco · USUniversity of Michigan · USHarvard University · US

Funding

Surfaceomic technologies and antibodies to probe cell surface proteomes and their interactomes at unprecedented small scale and high-resolutionR35GM122451 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAMES A WELLS · 2017 to 2026
$5.3M
Dysregulation of p97/VCP disease mutants in IBM and FTLD-UR01NS102279 · NINDS · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI CHOU, TSUI-FEN · 2018 to 2022
$2.8M
Supplement: GOLGI BIOGENESIS AND FUNCTIONR35GM130331 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WANG, YANZHUANG · 2019 to 2023
$2.7M
Protein and small-molecule tools to probe the conformational dependence of the VCP/p97 protein-protein interaction network--Equipment SupplementR01GM130145 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARKIN, MICHELLE · 2018 to 2021
$1.6M
Interrogating and rewiring cell signaling pathways in CAR-T cells with synthetic phosphotyrosine recognition domainsR00EB030587 · NIBIB · DANA-FARBER CANCER INST · PI ZHOU, XIN · 2022 to 2024
$733k
Understanding the effects of p97 protein-protein interactions on cellular functions using antibody-based inhibitorsF32GM139242 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JIANG, ZIWEN · 2021 to 2023
$205k
Interrogating and rewiring cell signaling pathways in CAR-T cells with synthetic phosphotyrosine recognition domainsK99EB030587 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZHOU, XIN · 2020 to 2021
$174k
NIBIB NIH HHS K99 EB030587NIBIB NIH HHS R00 EB030587NIGMS NIH HHS F32 GM139242NIGMS NIH HHS R01 GM130145NIGMS NIH HHS R35 GM122451NIGMS NIH HHS R35 GM130331NINDS NIH HHS R01 NS102279
6 · The paper itself

Abstract

Protein-protein interactions (PPIs) form complex networks to drive cellular signaling and cellular functions. Precise modulation of a target PPI helps explain the role of the PPI in cellular events and possesses therapeutic potential. For example, valosin-containing protein (VCP/p97) is a hub protein that interacts with more than 30 adaptor proteins involved in various cellular functions. However, the role of each p97 PPI during the relevant cellular event is underexplored. The development of small-molecule PPI modulators remains challenging due to a lack of grooves and pockets in the relatively large PPI interface and the fact that a common binding groove in p97 binds to multiple adaptors. Here, we report an antibody fragment-based modulator for the PPI between p97 and its adaptor protein NSFL1C (p47). We engineered these antibody modulators by phage display against the p97-interacting domain of p47 and minimizing binding to other p97 adaptors. The selected antibody fragment modulators specifically disrupt the intracellular p97/p47 interaction. The potential of this antibody platform to develop PPI inhibitors in therapeutic applications was demonstrated through the inhibition of Golgi reassembly, which requires the p97/p47 interaction. This study presents a unique approach to modulate specific intracellular PPIs using engineered antibody fragments, demonstrating a method to dissect the function of a PPI within a convoluted PPI network.

Indexed as

Adenosine TriphosphatasesCell Cycle ProteinsAdaptor Proteins, Signal TransducingImmunoglobulin FragmentsProtein BindingValosin Containing ProteinAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesCell Cycle ProteinsImmunoglobulin FragmentsValosin Containing Protein

Identifiers

PMID35819848
PMCPMC9335864
OpenAlexW4285076921

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.