Evidence map›Paper›PMID 35819701›Full record

ArticleVirus genes2022

Transcriptome sequencing of LMP2A-transfected gastric cancer cells identifies potential biomarkers in EBV-associated gastric cancer.

Wen Liu, Hua Xiao, Hui Song, Shucai An, Bing Luo

Abstract read
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In one paragraph

Article in Virus genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Wen LiuDepartment of Pathogenic Biology, School of Basic Medicine, Qingdao University, Qingdao, 266071, China.
Hua XiaoDepartment of Pathogenic Biology, School of Basic Medicine, Qingdao University, Qingdao, 266071, China.
Hui SongDepartment of Pathogenic Biology, School of Basic Medicine, Qingdao University, Qingdao, 266071, China.
Shucai AnGeneral Surgical Department, The Affiliated Hospital of Qingdao University, Qingdao, 266071, China.
Bing LuoDepartment of Pathogenic Biology, School of Basic Medicine, Qingdao University, Qingdao, 266071, China. qdluobing@163.com.ORCID http://orcid.org/0000-0001-7273-7536
Qingdao University · CN

Funding

Qingdao Science and Technology Demonstration Guide Project to Benefit the People 20-3-4-35-nsh
6 · The paper itself

Abstract

Epstein-barr virus (EBV) is a well-known human oncogenic virus. However, its molecular mechanisms in the initiation and development of EBV-associated gastric cancer (EBVaGC) remain poorly understood. Latent membrane protein 2A (LMP2A) is an EBV latency-associated protein expressed in part of EBVaGC cases. This study analyzed the effect of LMP2A on the gene expression of gastric cancer cells by transcriptome sequencing on the gastric cancer cell line SGC7901 that expresses LMP2A. The study monitored a total of 238 genes with significant differences in expression, including 101 upregulated genes and 137 downregulated genes. Using the KEGG pathway analysis, it was found that more genes were enriched in the Steroid biosynthesis, Axon guidance, and Terpenoid backbone biosynthesis pathway, and there were 5 genes each enriched in PI3K-Akt and AMPK signaling pathway, all of which were significant. This indicates that LMP2A may be involved in cell biosynthesis, and affects downstream genes and cell biological behavior through AKT and AMPK signaling pathway. Further evaluation confirmed that LMP2A induces ETV5 transcription, but repress GATA6 and NOTCH3 expression. ETV5, GATA6 and NOTCH3 are the candidate targets of LMP2A in gastric cancer.

Indexed as

Epstein-Barr Virus InfectionsStomach NeoplasmsAMP-Activated Protein KinasesBiomarkersHerpesvirus 4, HumanHumansMembrane ProteinsPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktTranscriptomeViral Matrix ProteinsAMP-Activated Protein KinasesBiomarkersMembrane ProteinsPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktViral Matrix ProteinsBiomarkersEBVGastric cancerLMP2A

Identifiers

PMID35819701
OpenAlexW4285077556

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.