Evidence map›Paper›PMID 35817801›Full record

ArticleNature communications2022

Translational fidelity and growth of Arabidopsis require stress-sensitive diphthamide biosynthesis.

Hongliang Zhang, Julia Quintana, Koray Ütkür, Lorenz Adrian, Harmen Hawer, Klaus Mayer, Xiaodi Gong, Leonardo Castanedo, Anna Schulten, Nadežda Janina and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. ACS omega · 2024
    Article
  7. Integrative analysis of the role of theTranslational cancer research · 2024
    Article
  8. Review
  9. Article
  10. Biomolecules · 2023
    Article
  11. Yeast geneMicrobial cell (Graz, Austria) · 2023
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Hongliang ZhangMolecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitaetsstrasse 150, Box 44 ND3/30, 44801, Bochum, Germany.ORCID 0000-0002-3002-798X
Julia QuintanaMolecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitaetsstrasse 150, Box 44 ND3/30, 44801, Bochum, Germany.ORCID 0000-0002-5145-3590
Koray ÜtkürMicrobiology, Institute for Biology, University of Kassel, 34132, Kassel, Germany.
Lorenz AdrianEnvironmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, 04318, Leipzig, Germany.ORCID 0000-0001-8205-0842
Harmen HawerMicrobiology, Institute for Biology, University of Kassel, 34132, Kassel, Germany.
Klaus MayerRoche Pharma Research & Early Development, Large Molecule Research, Roche Innovation Center Munich, 82377, Penzberg, Germany.
Xiaodi GongCentre for Organismal Studies (COS), University of Heidelberg, 69120, Heidelberg, Germany.ORCID 0000-0003-0104-506X
Leonardo CastanedoMolecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitaetsstrasse 150, Box 44 ND3/30, 44801, Bochum, Germany.
Anna SchultenMolecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitaetsstrasse 150, Box 44 ND3/30, 44801, Bochum, Germany.ORCID 0000-0003-3720-4325
Nadežda JaninaMolecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitaetsstrasse 150, Box 44 ND3/30, 44801, Bochum, Germany.ORCID 0000-0002-0162-9340
Marcus PetersMolecular Immunology, Medical Faculty, Ruhr University Bochum, 44801, Bochum, Germany.ORCID 0000-0003-1850-2845
Markus WirtzCentre for Organismal Studies (COS), University of Heidelberg, 69120, Heidelberg, Germany.ORCID 0000-0001-7790-4022
Ulrich BrinkmannRoche Pharma Research & Early Development, Large Molecule Research, Roche Innovation Center Munich, 82377, Penzberg, Germany.ORCID 0000-0002-5558-0212
Raffael SchaffrathMicrobiology, Institute for Biology, University of Kassel, 34132, Kassel, Germany.ORCID 0000-0001-9484-5247
Ute KrämerMolecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr University Bochum, Universitaetsstrasse 150, Box 44 ND3/30, 44801, Bochum, Germany. Ute.Kraemer@ruhr-uni-bochum.de.ORCID 0000-0001-7870-4508
Ruhr University Bochum · DEUniversity of Kassel · DEHeidelberg University · DERoche Pharma AG (Germany) · DEHelmholtz Centre for Environmental Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diphthamide, a post-translationally modified histidine residue of eukaryotic TRANSLATION ELONGATION FACTOR2 (eEF2), is the human host cell-sensitizing target of diphtheria toxin. Diphthamide biosynthesis depends on the 4Fe-4S-cluster protein Dph1 catalyzing the first committed step, as well as Dph2 to Dph7, in yeast and mammals. Here we show that diphthamide modification of eEF2 is conserved in Arabidopsis thaliana and requires AtDPH1. Ribosomal -1 frameshifting-error rates are increased in Arabidopsis dph1 mutants, similar to yeast and mice. Compared to the wild type, shorter roots and smaller rosettes of dph1 mutants result from fewer formed cells. TARGET OF RAPAMYCIN (TOR) kinase activity is attenuated, and autophagy is activated, in dph1 mutants. Under abiotic stress diphthamide-unmodified eEF2 accumulates in wild-type seedlings, most strongly upon heavy metal excess, which is conserved in human cells. In summary, our results suggest that diphthamide contributes to the functionality of the translational machinery monitored by plants to regulate growth.

Indexed as

ArabidopsisSaccharomyces cerevisiae ProteinsAnimalsHistidineHumansMammalsMiceProteinsSaccharomyces cerevisiaediphthamideDPH2 protein, humanHistidineProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID35817801
PMCPMC9273596
OpenAlexW4285043405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.