Evidence map›Paper›PMID 35817781›Full record

ArticleScientific reports2022

Direct PCR with the CDC 2019 SARS-CoV-2 assay: optimization for limited-resource settings.

Christia M Victoriano, Megan E Pask, Nicole A Malofsky, Adam Seegmiller, Steve Simmons, Jonathan E Schmitz, Frederick R Haselton, Nicholas M Adams

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Christia M VictorianoDepartment of Biomedical Engineering, Vanderbilt University, 5923 Stevenson Center, 1225 Stevenson Center Lane, Nashville, TN, 37240, USA.
Megan E PaskDepartment of Biomedical Engineering, Vanderbilt University, 5923 Stevenson Center, 1225 Stevenson Center Lane, Nashville, TN, 37240, USA.
Nicole A MalofskyDepartment of Biomedical Engineering, Vanderbilt University, 5923 Stevenson Center, 1225 Stevenson Center Lane, Nashville, TN, 37240, USA.
Adam SeegmillerDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.
Steve SimmonsBioventures, Inc., Murfreesboro, TN, USA.
Jonathan E SchmitzDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.
Frederick R HaseltonDepartment of Biomedical Engineering, Vanderbilt University, 5923 Stevenson Center, 1225 Stevenson Center Lane, Nashville, TN, 37240, USA. rick.haselton@vanderbilt.edu.ORCID 0000-0003-4282-5222
Nicholas M AdamsDepartment of Biomedical Engineering, Vanderbilt University, 5923 Stevenson Center, 1225 Stevenson Center Lane, Nashville, TN, 37240, USA. n.adams@vanderbilt.edu.

Funding

Point-of-Care RT-PCR System to Inform COVID-19 and Respiratory Illness DecisionsR01AI157827 · NIAID · VANDERBILT UNIVERSITY · PI Frederick R Haselton, Jonathan E Schmitz · 2020 to 2026
$4.7M
Enabling point-of-care molecular diagnostics by developing an adaptive PCR instrument and on-demand kit reagentsR42HG009470 · NHGRI · BIOVENTURES, INC. · PI ADAMS, NICHOLAS M, HASELTON, FREDERICK R · 2017 to 2019
$2.8M
NHGRI NIH HHS R42 HG009470NIAID NIH HHS R01 AI157827
6 · The paper itself

Abstract

PCR-based diagnostics generally require nucleic acid extraction from patient specimens prior to amplification. As highlighted early in the COVID-19 pandemic, extraction steps may be difficult to scale during times of massive demand and limited reagent supply. Forgoing an extraction step, we previously reported that the N1 primer/probe-set of the widespread CDC COVID-19 assay maintains high categorical sensitivity (95%) and specificity (100%) with direct inoculation of viral transport media (VTM) into qRT-PCR reactions. In contrast, the N2 set demonstrated a prominent C

Indexed as

COVID-19SARS-CoV-2Centers for Disease Control and Prevention, U.S.Clinical Laboratory TechniquesCOVID-19 TestingHumansPandemicsPolymerase Chain ReactionRNA, ViralSensitivity and SpecificityUnited StatesRNA, Viral

Identifiers

PMID35817781
PMCPMC9272867

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.