Evidence map›Paper›PMID 35816006›Full record

ArticleG3 (Bethesda, Md.)2022

Large RNP granules in Caenorhabditis elegans oocytes have distinct phases of RNA-binding proteins.

Mohamed T Elaswad, Brooklynne M Watkins, Katherine G Sharp, Chloe Munderloh, Jennifer A Schisa

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mohamed T ElaswadBiochemistry, Cell and Molecular Biology Program, Central Michigan University, Mt. Pleasant, MI 48859, USA.ORCID 0000-0003-1401-0501
Brooklynne M WatkinsBiochemistry, Cell and Molecular Biology Program, Central Michigan University, Mt. Pleasant, MI 48859, USA.ORCID 0000-0001-5190-4235
Katherine G SharpDepartment of Biology, Central Michigan University, Mt. Pleasant, MI 48859, USA.ORCID 0000-0003-1839-9243
Chloe MunderlohDepartment of Biology, Central Michigan University, Mt. Pleasant, MI 48859, USA.ORCID 0000-0002-7821-0134
Jennifer A SchisaBiochemistry, Cell and Molecular Biology Program, Central Michigan University, Mt. Pleasant, MI 48859, USA.ORCID 0000-0002-5213-7362
Central Michigan University · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Mechanisms of RNP granule function in the germ lineR15GM109337 · NIGMS · CENTRAL MICHIGAN UNIVERSITY · PI SCHISA, JENNIFER · 2014 to 2018
$752k
NIGMS NIH HHS R15 GM109337NIH HHS P40 OD010440
6 · The paper itself

Abstract

The germ line provides an excellent in vivo system to study the regulation and function of RNP granules. Germ granules are conserved germ line-specific RNP granules that are positioned in the Caenorhabditis elegans adult gonad to function in RNA maintenance, regulation, and surveillance. In Caenorhabditis elegans, when oogenesis undergoes extended meiotic arrest, germ granule proteins and other RNA-binding proteins assemble into much larger RNP granules whose hypothesized function is to regulate RNA metabolism and maintain oocyte quality. To gain insight into the function of oocyte RNP granules, in this report, we characterize distinct phases for four protein components of RNP granules in arrested oocytes. We find that the RNA-binding protein PGL-1 is dynamic and has liquid-like properties, while the intrinsically disordered protein MEG-3 has gel-like properties, similar to the properties of the two proteins in small germ granules of embryos. We find that MEX-3 exhibits several gel-like properties but is more dynamic than MEG-3, while CGH-1 is dynamic but does not consistently exhibit liquid-like characteristics and may be an intermediate phase within RNP granules. These distinct phases of RNA-binding proteins correspond to, and may underlie, differential responses to stress. Interestingly, in oocyte RNP granules, MEG-3 is not required for the condensation of PGL-1 or other RNA-binding proteins, which differs from the role of MEG-3 in small, embryonic germ granules. Lastly, we show that the PUF-5 translational repressor appears to promote MEX-3 and MEG-3 condensation into large RNP granules; however, this role may be associated with regulation of oogenesis.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsGerm CellsOocytesRNARNA-Binding ProteinsRNA NucleotidyltransferasesCaenorhabditis elegans Proteinscgh-1 protein, C elegansMEX-3 protein, C elegansPGL-1 protein, C elegansRNARNA-Binding ProteinsRNA NucleotidyltransferasesCaenorhabditis eleganscondensationoogenesisphase transitionRNA-binding proteinRNP granule

Identifiers

PMID35816006
PMCPMC9434171
OpenAlexW4285009538

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.