Evidence map›Paper›PMID 35815349›Full record

ArticleJournal of thrombosis and haemostasis : JTH2022

Nanobodies against factor XI apple 3 domain inhibit binding of factor IX and reveal a novel binding site for high molecular weight kininogen.

Awital Bar Barroeta, J Arnoud Marquart, Kamran Bakhtiari, Alexander B Meijer, Rolf T Urbanus, Joost C M Meijers

Open access · greenAbstract read
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. HK is the apple of FXI's eye.Journal of thrombosis and haemostasis : JTH · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Awital Bar BarroetaDepartment of Molecular Hematology, Sanquin, Amsterdam, the Netherlands.ORCID 0000-0002-0744-5569
J Arnoud MarquartDepartment of Molecular Hematology, Sanquin, Amsterdam, the Netherlands.ORCID 0000-0002-2713-6165
Kamran BakhtiariDepartment of Molecular Hematology, Sanquin, Amsterdam, the Netherlands.ORCID 0000-0002-7818-7966
Alexander B MeijerDepartment of Molecular Hematology, Sanquin, Amsterdam, the Netherlands.ORCID 0000-0002-5447-7838
Rolf T UrbanusCenter for Benign Haematology, Thrombosis and Haemostasis, Van Creveldkliniek, University Medical Center Utrecht, University Utrecht, Utrecht, the Netherlands.ORCID 0000-0002-1601-9393
Joost C M MeijersDepartment of Molecular Hematology, Sanquin, Amsterdam, the Netherlands.ORCID 0000-0002-4198-6780
Sanquin · NLUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFactor XI (FXI) is a promising target for novel anticoagulants because it shows a strong relation to thromboembolic diseases, while fulfilling a mostly supportive role in hemostasis. Anticoagulants targeting FXI could therefore reduce the risk for thrombosis, without increasing the chance of bleeding side effects.

objectivesTo generate nanobodies that can interfere with FXIa mediated activation of factor IX (FIX).

methodsNanobodies were selected for binding to the apple 3 domain of FXI and their effects on FXI and coagulation were measured in purified protein systems as well as in plasma-based coagulation assays. Additionally, the binding epitope of selected nanobodies was assessed by hydrogen-deuterium exchange mass spectrometry.

resultsWe have identified five nanobodies that inhibit FIX activation by FXI by competing with the FIX binding site on FXI. Interestingly, a sixth nanobody was found to target a different binding epitope in the apple 3 domain, resulting in competition with the FXI-high molecular weight kininogen (HK) interaction.

conclusionsWe have characterized a nanobody targeting the FXI apple 3 domain that elucidates the binding orientation of HK on FXI. Moreover, we have produced five nanobodies that can inhibit the FXI-FIX interaction.

Indexed as

Factor IXFactor XIKininogen, High-Molecular-WeightSingle-Domain AntibodiesAnticoagulantsBinding SitesDeuteriumEpitopesHumansAnticoagulantsDeuteriumEpitopesFactor IXFactor XIKininogen, High-Molecular-WeightSingle-Domain Antibodiesanticoagulantsfactor XIhigh molecular weight kininogenhydrogen-deuterium exchange mass spectrometrynanobody

Identifiers

PMID35815349
PMCPMC9795894
OpenAlexW4285012889

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.