Evidence map›Paper›PMID 35810211›Full record

ArticleCommunications biology2022

Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change.

Bo Ma, Jing Wu, Tian-Le Shi, Yun-Yao Yang, Wen-Bo Wang, Yi Zheng, Shu-Chai Su, Yun-Cong Yao, Wen-Bo Xue, Ilga Porth and 4 more

Abstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Heterologous Expression ofPlants (Basel, Switzerland) · 2026
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  11. Review
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  14. Pigment Diversity in Leaves ofInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Frontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Bo Ma *Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.ORCID http://orcid.org/0000-0002-5867-1718
Jing Wu *Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.
Tian-Le Shi *Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, The Key Laboratory for Silviculture and Conservation of the Ministry of Education, National Engineering Research Center of Tree Breeding and Ecological Restoration, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, College of Forestry, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.
Yun-Yao YangBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.
Wen-Bo WangBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.
Yi ZhengBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.
Shu-Chai SuBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, The Key Laboratory for Silviculture and Conservation of the Ministry of Education, National Engineering Research Center of Tree Breeding and Ecological Restoration, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, College of Forestry, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.
Yun-Cong YaoBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.
Wen-Bo XueBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Ilga PorthDépartment des Sciences du Bois et de la Forêt, Faculté de Foresterie, de Géographie et Géomatique, Université Laval, Québec, QC, G1V 0A6, Canada.
Yousry A El-KassabyDepartment of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.ORCID http://orcid.org/0000-0002-4887-8977
Ping-Sheng LengBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China. lengpsh@tom.com.ORCID http://orcid.org/0000-0002-2003-1926
Zeng-Hui HuBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Landscape Architecture, Beijing Laboratory of Urban and Rural Ecological Environment, Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China. buahuzenghui@163.com.ORCID http://orcid.org/0000-0002-8432-6766
Jian-Feng MaoBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, The Key Laboratory for Silviculture and Conservation of the Ministry of Education, National Engineering Research Center of Tree Breeding and Ecological Restoration, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, College of Forestry, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China. jianfeng.mao@bjfu.edu.cn.ORCID http://orcid.org/0000-0001-9735-8516

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Color change during flower opening is common; however, little is understood on the biochemical and molecular basis related. Lilac (Syringa oblata), a well-known woody ornamental plant with obvious petal color changes, is an ideal model. Here, we presented chromosome-scale genome assembly for lilac, resolved the flavonoids metabolism, and identified key genes and potential regulatory networks related to petal color change. The genome assembly is 1.05 Gb anchored onto 23 chromosomes, with a BUSCO score of 96.6%. Whole-genome duplication (WGD) event shared within Oleaceae was revealed. Metabolome quantification identified delphinidin-3-O-rutinoside (Dp3Ru) and cyanidin-3-O-rutinoside (Cy3Ru) as the major pigments; gene co-expression networks indicated WRKY an essential regulation factor at the early flowering stage, ERF more important in the color transition period (from violet to light nearly white), while the MBW complex participated in the entire process. Our results provide a foundation for functional study and molecular breeding in lilac.

Indexed as

SyringaFlowersLightMetabolomePigmentation

Identifiers

PMID35810211
PMCPMC9271065

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.