Evidence map›Paper›PMID 35810198›Full record

ArticleCommunications biology2022

The clove (Syzygium aromaticum) genome provides insights into the eugenol biosynthesis pathway.

Sonia Ouadi, Nicolas Sierro, Simon Goepfert, Lucien Bovet, Gaetan Glauser, Armelle Vallat, Manuel C Peitsch, Felix Kessler, Nikolai V Ivanov

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  16. Review
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  18. AScience progress
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sonia OuadiFaculty of Sciences, Laboratory of Plant Physiology, University of Neuchâtel, 2000, Neuchâtel, Switzerland.ORCID http://orcid.org/0000-0002-5141-8197
Nicolas SierroPMI R&D, Philip Morris Products S. A, Quai Jeanrenaud 5, CH-2000, Neuchâtel, Switzerland.
Simon GoepfertPMI R&D, Philip Morris Products S. A, Quai Jeanrenaud 5, CH-2000, Neuchâtel, Switzerland.ORCID http://orcid.org/0000-0002-2701-8644
Lucien BovetPMI R&D, Philip Morris Products S. A, Quai Jeanrenaud 5, CH-2000, Neuchâtel, Switzerland.
Gaetan GlauserFaculty of Sciences, Neuchâtel Platform of Analytical Chemistry, University of Neuchâtel, 2000, Neuchâtel, Switzerland.
Armelle VallatFaculty of Sciences, Neuchâtel Platform of Analytical Chemistry, University of Neuchâtel, 2000, Neuchâtel, Switzerland.
Manuel C PeitschPMI R&D, Philip Morris Products S. A, Quai Jeanrenaud 5, CH-2000, Neuchâtel, Switzerland.ORCID http://orcid.org/0000-0001-5324-359X
Felix KesslerFaculty of Sciences, Laboratory of Plant Physiology, University of Neuchâtel, 2000, Neuchâtel, Switzerland.ORCID http://orcid.org/0000-0001-6409-5043
Nikolai V IvanovPMI R&D, Philip Morris Products S. A, Quai Jeanrenaud 5, CH-2000, Neuchâtel, Switzerland. nikolai.ivanov@pmi.com.ORCID http://orcid.org/0000-0002-2052-4333
Philip Morris International (Switzerland) · CHUniversity of Neuchâtel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The clove (Syzygium aromaticum) is an important tropical spice crop in global trade. Evolving environmental pressures necessitate modern characterization and selection techniques that are currently inaccessible to clove growers owing to the scarcity of genomic and genetic information. Here, we present a 370-Mb high-quality chromosome-scale genome assembly for clove. Comparative genomic analysis between S. aromaticum and Eucalyptus grandis-both species of the Myrtaceae family-reveals good genome structure conservation and intrachromosomal rearrangements on seven of the eleven chromosomes. We report genes that belong to families involved in the biosynthesis of eugenol, the major bioactive component of clove products. On the basis of our transcriptomic and metabolomic findings, we propose a hypothetical scenario in which eugenol acetate plays a key role in high eugenol accumulation in clove leaves and buds. The clove genome is a new contribution to omics resources for the Myrtaceae family and an important tool for clove research.

Indexed as

SyzygiumEugenolHumansPlant LeavesEugenol

Identifiers

PMID35810198
PMCPMC9271057
OpenAlexW4284960279

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.