Evidence map›Paper›PMID 35809036›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2022

Gene expression analysis of the Xenopus laevis early limb bud proximodistal axis.

Daniel T Hudson, Jessica S Bromell, Robert C Day, Tyler McInnes, Joanna M Ward, Caroline W Beck

Open access · greenAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Gene expression analysis of the Xenopus laevis early limb bud proximodistal axis.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daniel T HudsonDepartment of Zoology, University of Otago, Dunedin, New Zealand.
Jessica S BromellDepartment of Zoology, University of Otago, Dunedin, New Zealand.
Robert C DayDepartment of Biochemistry, University of Otago, Dunedin, New Zealand.
Tyler McInnesDepartment of Zoology, University of Otago, Dunedin, New Zealand.
Joanna M WardDepartment of Zoology, University of Otago, Dunedin, New Zealand.
Caroline W BeckDepartment of Zoology, University of Otago, Dunedin, New Zealand.ORCID 0000-0001-6489-7425
University of Otago · NZDairyNZ · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLimb buds develop as bilateral outgrowths of the lateral plate mesoderm and are patterned along three axes. Current models of proximal to distal patterning of early amniote limb buds suggest that two signals, a distal organizing signal from the apical epithelial ridge (AER, Fgfs) and an opposing proximal (retinoic acid [RA]) act early on pattern this axis.

resultsTranscriptional analysis of stage 51 Xenopus laevis hindlimb buds sectioned along the proximal-distal axis showed that the distal region is distinct from the rest of the limb. Expression of capn8.3, a novel calpain, was located in cells immediately flanking the AER. The Wnt antagonist Dkk1 was AER-specific in Xenopus limbs. Two transcription factors, sall1 and zic5, were expressed in distal mesenchyme. Zic5 has no described association with limb development. We also describe expression of two proximal genes, gata5 and tnn, not previously associated with limb development. Differentially expressed genes were associated with Fgf, Wnt, and RA signaling as well as differential cell adhesion and proliferation.

conclusionsWe identify new candidate genes for early proximodistal limb patterning. Our analysis of RA-regulated genes supports a role for transient RA gradients in early limb bud in proximal-to-distal patterning in this anamniote model organism.

Indexed as

Gene Expression Regulation, DevelopmentalLimb BudsAnimalsDNA-Binding ProteinsEctodermExtremitiesFibroblast Growth FactorsGene ExpressionMesodermNerve Tissue ProteinsTretinoinXenopus laevisXenopus ProteinsDNA-Binding ProteinsFibroblast Growth FactorsNerve Tissue ProteinsTretinoinXenopus ProteinsZic5 protein, Xenopusapical ectodermal ridgedevelopmentdistallimb budpatterningproximalretinoic acidXenopus

Identifiers

PMID35809036
PMCPMC9796579
OpenAlexW4284971210

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.