Evidence map›Paper›PMID 35806109›Full record

ArticleInternational journal of molecular sciences2022

Human PARP1 Facilitates Transcription through a Nucleosome and Histone Displacement by Pol II In Vitro.

Elena Y Kotova, Fu-Kai Hsieh, Han-Wen Chang, Natalia V Maluchenko, Marie-France Langelier, John M Pascal, Donal S Luse, Alexey V Feofanov, Vasily M Studitsky

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Elena Y KotovaFox Chase Cancer Center, Philadelphia, PA 19111, USA.
Fu-Kai HsiehDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA.
Han-Wen ChangFox Chase Cancer Center, Philadelphia, PA 19111, USA.
Natalia V MaluchenkoBiology Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia.ORCID 0000-0003-4129-4984
Marie-France LangelierDepartment of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC H3T 1J4, Canada.
John M PascalDepartment of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC H3T 1J4, Canada.
Donal S LuseDepartment of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA.
Alexey V FeofanovBiology Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia.
Vasily M StuditskyFox Chase Cancer Center, Philadelphia, PA 19111, USA.
Fox Chase Cancer Center · USLomonosov Moscow State University · RUUniversité de Montréal · CACleveland Clinic Lerner College of Medicine · USMassachusetts General Hospital · US

Funding

Mechanism of yFACT Action during Chromatin TranscriptionR01GM119398 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI STILLMAN, DAVID J, STUDITSKY, VASILY M · 2017 to 2020
$1.3M
Coordination of early events in RNA polymerase II elongation controlR01GM113935 · NIGMS · UNIVERSITY OF IOWA · PI LUSE, DONAL, PRICE, DAVID H · 2016 to 2017
$786k
Mechanisms of PARP-1 interaction with chromatinR21CA220151 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI STUDITSKY, VASILY M · 2017 to 2019
$435k
CIHR BMA342854NCI NIH HHS R21 CA220151NIGMS NIH HHS R01 GM113935NIGMS NIH HHS R01 GM119398NIH HHS GM113935NIH HHS R21CA220151NIH HHS RO1GM119398Russian Ministry of Science and Higher Education 075-15-2021-1062
6 · The paper itself

Abstract

Human poly(ADP)-ribose polymerase-1 (PARP1) is a global regulator of various cellular processes, from DNA repair to gene expression. The underlying mechanism of PARP1 action during transcription remains unclear. Herein, we have studied the role of human PARP1 during transcription through nucleosomes by RNA polymerase II (Pol II) in vitro. PARP1 strongly facilitates transcription through mononucleosomes by Pol II and displacement of core histones in the presence of NAD+ during transcription, and its NAD+-dependent catalytic activity is essential for this process. Kinetic analysis suggests that PARP1 facilitates formation of "open" complexes containing nucleosomal DNA partially uncoiled from the octamer and allowing Pol II progression along nucleosomal DNA. Anti-cancer drug and PARP1 catalytic inhibitor olaparib strongly represses PARP1-dependent transcription. The data suggest that the negative charge on protein(s) poly(ADP)-ribosylated by PARP1 interact with positively charged DNA-binding surfaces of histones transiently exposed during transcription, facilitating transcription through chromatin and transcription-dependent histone displacement/exchange.

Indexed as

HistonesNucleosomesAdenosine DiphosphateDNAHumansKineticsNADPoly (ADP-Ribose) Polymerase-1Transcription, GeneticAdenosine DiphosphateDNAHistonesNADNucleosomesPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1elongationnucleosomeolaparibPARP1poly(ADP)-ribose polymerase-1transcription

Identifiers

PMID35806109
PMCPMC9266421
OpenAlexW4283515927

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.