Evidence map›Paper›PMID 35804569›Full record

ArticleAnimals : an open access journal from MDPI2022

Automated Cardiac Chamber Size and Cardiac Physiology Measurement in Water Fleas by U-Net and Mask RCNN Convolutional Networks.

Ferry Saputra, Ali Farhan, Michael Edbert Suryanto, Kevin Adi Kurnia, Kelvin H-C Chen, Ross D Vasquez, Marri Jmelou M Roldan, Jong-Chin Huang, Yih-Kai Lin, Chung-Der Hsiao

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ferry SaputraDepartment of Chemistry, Chung Yuan Christian University, Taoyuan 320314, Taiwan.ORCID 0000-0002-5715-9827
Ali FarhanDepartment of Chemistry, Chung Yuan Christian University, Taoyuan 320314, Taiwan.ORCID 0000-0003-4735-7069
Michael Edbert SuryantoDepartment of Chemistry, Chung Yuan Christian University, Taoyuan 320314, Taiwan.ORCID 0000-0003-0089-6516
Kevin Adi KurniaDepartment of Chemistry, Chung Yuan Christian University, Taoyuan 320314, Taiwan.ORCID 0000-0002-3403-0879
Kelvin H-C ChenDepartment of Applied Chemistry, National Pingtung University, Pingtung 90003, Taiwan.ORCID 0000-0002-2709-2633
Ross D VasquezDepartment of Pharmacy, Research Center for Natural and Applied Sciences, University of Santo Tomas, Manila 1008, Philippines.ORCID 0000-0002-5906-9710
Marri Jmelou M RoldanFaculty of Pharmacy, The Graduate School, University of Santo Tomas, Manila 1008, Philippines.ORCID 0000-0001-6398-1828
Jong-Chin HuangDepartment of Applied Chemistry, National Pingtung University, Pingtung 90003, Taiwan.ORCID 0000-0003-3997-1683
Yih-Kai LinDepartment of Computer Science, National Pingtung University, Pingtung 90003, Taiwan.ORCID 0000-0001-6509-0017
Chung-Der HsiaoDepartment of Chemistry, Chung Yuan Christian University, Taoyuan 320314, Taiwan.ORCID 0000-0002-6398-8672
Chung Yuan Christian University · TWNational Pingtung University · TWUniversity of Santo Tomas · PH

Funding

Ministry of Science Technology, Taiwan MOST107-2622-B-033-001-CC2 and MOST108-2622-B-033-001-CC2 to C.-D.H.
6 · The paper itself

Abstract

Water fleas are an important lower invertebrate model that are usually used for ecotoxicity studies. Contrary to mammals, the heart of a water flea has a single chamber, which is relatively big in size and with fast-beating properties. Previous cardiac chamber volume measurement methods are primarily based on ImageJ manual counting at systolic and diastolic phases which suffer from low efficiency, high variation, and tedious operation. This study provides an automated and robust pipeline for cardiac chamber size estimation by a deep learning approach. Image segmentation analysis was performed using U-Net and Mask RCNN convolutional networks on several different species of water fleas such as

Indexed as

cardiac physiologydeep learningMask RCNNU-Netwater flea

Identifiers

PMID35804569
PMCPMC9265036
OpenAlexW4283728785

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.